Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRB87_RS02925 Genome accession   NZ_CP030849
Coordinates   643824..644354 (+) Length   176 a.a.
NCBI ID   WP_130024798.1    Uniprot ID   -
Organism   Pandoraea sp. XY-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 638824..649354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRB87_RS02915 (DRB87_02925) uvrA 639281..642142 (-) 2862 Protein_593 excinuclease ABC subunit UvrA -
  DRB87_RS02920 (DRB87_02930) - 642687..643793 (+) 1107 WP_130027683.1 MFS transporter -
  DRB87_RS02925 (DRB87_02935) ssb 643824..644354 (+) 531 WP_130024798.1 single-stranded DNA-binding protein Machinery gene
  DRB87_RS02930 (DRB87_02940) - 644796..645656 (+) 861 WP_130027684.1 sulfurtransferase -
  DRB87_RS02935 (DRB87_02945) - 645886..646926 (-) 1041 WP_130024799.1 porin -
  DRB87_RS02940 (DRB87_02950) - 647164..647886 (-) 723 WP_240756153.1 GntR family transcriptional regulator -
  DRB87_RS02945 (DRB87_02955) - 648102..648530 (+) 429 WP_130024800.1 heme-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18199.89 Da        Isoelectric Point: 5.3258

>NTDB_id=301872 DRB87_RS02925 WP_130024798.1 643824..644354(+) (ssb) [Pandoraea sp. XY-2]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKELTEWHRVSFFGRLAEIVNEYLKKGSAVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGEGGGGGGGGYSRGGGGGGDEGGGGGYSRGGSGGGSGGGGARQQAPA
KQSGGGFDDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=301872 DRB87_RS02925 WP_130024798.1 643824..644354(+) (ssb) [Pandoraea sp. XY-2]
ATGGCATCAGTCAACAAAGTAATCCTGGTCGGCAATCTTGGCGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCTGGCGAGTTCAAGGAGCTGACTGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTCGCGGAGATCGTGAACGAGTACCTGAAGAAGGGCTCGGCGGTGTATATCGAAGGT
CGTATCCGCACGCGCAAGTACCAGGCGCAGGACGGCACCGAGCGTTACAGCACGGAAATCGTGGCAGACCAGATGCAGAT
GCTGGGCGGCCGCAGCGGCGGTGAGGGCGGTGGTGGCGGTGGTGGTGGCTACTCGCGCGGCGGTGGTGGTGGCGGCGACG
AAGGCGGTGGTGGTGGCTATTCGCGCGGCGGCAGCGGCGGTGGCAGCGGCGGCGGTGGTGCCCGTCAGCAAGCACCGGCC
AAGCAGTCGGGTGGCGGTTTTGACGATATGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.099

100

0.528
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.494
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.449
  ssb Neisseria meningitidis MC58

43.889

100

0.449
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.264

100

0.375

Multiple sequence alignment