Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DRA77_RS02665 Genome accession   NZ_CP030814
Coordinates   517921..518520 (+) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 16-579     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512921..523520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA77_RS02640 (DRA77_03020) - 513228..513815 (-) 588 WP_002213845.1 superoxide dismutase -
  DRA77_RS02645 (DRA77_03030) dnaB 513977..515383 (+) 1407 WP_002219448.1 replicative DNA helicase -
  DRA77_RS02650 (DRA77_03035) pilH 515692..516369 (+) 678 WP_101079073.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA77_RS02655 (DRA77_03040) pilV 516393..517007 (+) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  DRA77_RS02660 (DRA77_03045) pilJ 517004..517942 (+) 939 WP_101079071.1 PilW family protein Machinery gene
  DRA77_RS02665 (DRA77_03050) pilK 517921..518520 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA77_RS02670 (DRA77_03055) pilX 518525..518998 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  DRA77_RS02675 (DRA77_03080) - 521105..521533 (-) 429 Protein_513 AzlC family ABC transporter permease -
  DRA77_RS02680 (DRA77_03085) dut 521676..522128 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DRA77_RS02685 (DRA77_03090) dapC 522204..523391 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=301571 DRA77_RS02665 WP_002248501.1 517921..518520(+) (pilK) [Neisseria meningitidis strain 16-579]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=301571 DRA77_RS02665 WP_002248501.1 517921..518520(+) (pilK) [Neisseria meningitidis strain 16-579]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869

Multiple sequence alignment