Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSB67_RS13760 Genome accession   NZ_CP030788
Coordinates   2843115..2843654 (-) Length   179 a.a.
NCBI ID   WP_010648159.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2838115..2848654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS13740 (DSB67_13745) - 2838429..2838758 (-) 330 WP_010648151.1 hypothetical protein -
  DSB67_RS13745 (DSB67_13750) gspM 2838751..2839401 (-) 651 WP_010648153.1 type II secretion system protein GspM -
  DSB67_RS13750 (DSB67_13755) - 2839398..2840846 (-) 1449 WP_010648155.1 MSHA biogenesis protein MshI -
  DSB67_RS13755 (DSB67_13760) csrD 2840858..2842867 (-) 2010 WP_010648157.1 RNase E specificity factor CsrD -
  DSB67_RS13760 (DSB67_13765) ssb 2843115..2843654 (-) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  DSB67_RS13765 (DSB67_13770) qstR 2843948..2844592 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  DSB67_RS13770 (DSB67_13775) galU 2844756..2845628 (+) 873 WP_010648161.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DSB67_RS13775 (DSB67_13780) uvrA 2845767..2848589 (+) 2823 WP_010648164.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9269

>NTDB_id=301522 DSB67_RS13760 WP_010648159.1 2843115..2843654(-) (ssb) [Vibrio campbellii strain DS40M4]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=301522 DSB67_RS13760 WP_010648159.1 2843115..2843654(-) (ssb) [Vibrio campbellii strain DS40M4]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAGC
AACAAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAG
CAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.25

100

0.603
  ssb Neisseria meningitidis MC58

48.066

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48

Multiple sequence alignment