Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DSB67_RS12875 Genome accession   NZ_CP030788
Coordinates   2675626..2676669 (-) Length   347 a.a.
NCBI ID   WP_005531686.1    Uniprot ID   A0AAE9SPA4
Organism   Vibrio campbellii strain DS40M4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2670626..2681669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS12860 (DSB67_12865) - 2670837..2672024 (-) 1188 WP_010650383.1 aspartate kinase -
  DSB67_RS12865 (DSB67_12870) alaS 2672227..2674809 (-) 2583 WP_010650382.1 alanine--tRNA ligase -
  DSB67_RS12870 (DSB67_12875) recX 2674952..2675419 (-) 468 WP_010650380.1 recombination regulator RecX -
  DSB67_RS12875 (DSB67_12880) recA 2675626..2676669 (-) 1044 WP_005531686.1 recombinase RecA Machinery gene
  DSB67_RS12880 (DSB67_12885) pncC 2676870..2677352 (-) 483 WP_005531683.1 nicotinamide-nucleotide amidase -
  DSB67_RS12885 (DSB67_12890) mutS 2677438..2679999 (+) 2562 WP_010650370.1 DNA mismatch repair protein MutS -
  DSB67_RS12890 (DSB67_12895) rpoS 2680088..2681074 (-) 987 WP_005425361.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37431.89 Da        Isoelectric Point: 4.8875

>NTDB_id=301516 DSB67_RS12875 WP_005531686.1 2675626..2676669(-) (recA) [Vibrio campbellii strain DS40M4]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDA
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=301516 DSB67_RS12875 WP_005531686.1 2675626..2676669(-) (recA) [Vibrio campbellii strain DS40M4]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATTGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGACGCAGAGCACGCGCTAGACCCTGTATACGCGATGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCAGACACTGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGACTCAGTAGCAGCACTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACGGGTAACCTAAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACAACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCAGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGTGAAGGCGAACTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCGGGTGCATGGTACAGCTACCAAG
GCGACAAGATCGGCCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAAACTATCGATGCT
AAACTGCGTGAAATGCTACTTTCACCAGCACTGCCTGAAGCACCAGAATCGGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

72.832

99.712

0.726
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baumannii D1279779

75

94.524

0.709
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.948

0.648
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.588

97.983

0.594
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.931

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

62.229

93.084

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.354

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.084

0.556

Multiple sequence alignment