Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DSB67_RS12730 Genome accession   NZ_CP030788
Coordinates   2653012..2653530 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain DS40M4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648012..2658530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS12705 (DSB67_12710) rimM 2648068..2648616 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  DSB67_RS12710 (DSB67_12715) rpsP 2648644..2648892 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  DSB67_RS12715 (DSB67_12720) ffh 2649103..2650485 (-) 1383 WP_005462555.1 signal recognition particle protein -
  DSB67_RS12720 (DSB67_12725) - 2650699..2651493 (+) 795 WP_005534057.1 cytochrome C assembly family protein -
  DSB67_RS12725 (DSB67_12730) - 2651649..2652923 (+) 1275 WP_005534059.1 HlyC/CorC family transporter -
  DSB67_RS12730 (DSB67_12735) luxS 2653012..2653530 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  DSB67_RS12735 (DSB67_12740) - 2653620..2654183 (-) 564 WP_010643242.1 hypothetical protein -
  DSB67_RS12740 (DSB67_12745) gshA 2654245..2655813 (-) 1569 WP_010643241.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=301515 DSB67_RS12730 WP_010643243.1 2653012..2653530(-) (luxS) [Vibrio campbellii strain DS40M4]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=301515 DSB67_RS12730 WP_010643243.1 2653012..2653530(-) (luxS) [Vibrio campbellii strain DS40M4]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAATCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATAGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment