Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ETT66_RS04900 Genome accession   NZ_CP035433
Coordinates   971546..972226 (-) Length   226 a.a.
NCBI ID   WP_136286235.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 966546..977226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT66_RS04870 (ETT66_04870) - 966784..967362 (+) 579 WP_002984698.1 CYTH domain-containing protein -
  ETT66_RS04875 (ETT66_04875) - 967502..968482 (+) 981 WP_002984700.1 ribose-phosphate diphosphokinase -
  ETT66_RS04880 (ETT66_04880) - 968479..969606 (+) 1128 WP_002989829.1 cysteine desulfurase family protein -
  ETT66_RS04885 (ETT66_04885) - 969596..969943 (+) 348 WP_002989831.1 DUF1831 domain-containing protein -
  ETT66_RS04890 (ETT66_04890) - 970195..970839 (+) 645 WP_002984705.1 redox-sensing transcriptional repressor Rex -
  ETT66_RS04895 (ETT66_04895) - 970849..971544 (+) 696 WP_136096947.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ETT66_RS04900 (ETT66_04900) radC 971546..972226 (-) 681 WP_136286235.1 DNA repair protein RadC Machinery gene
  ETT66_RS04905 (ETT66_04905) - 972275..973402 (-) 1128 WP_002994399.1 AI-2E family transporter -
  ETT66_RS04910 (ETT66_04910) - 973582..974196 (-) 615 WP_002984715.1 SGNH/GDSL hydrolase family protein -
  ETT66_RS04915 (ETT66_04915) - 974359..975891 (-) 1533 WP_002995354.1 ClC family H(+)/Cl(-) exchange transporter -
  ETT66_RS04920 (ETT66_04920) aphA 976069..976800 (-) 732 WP_002984720.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25742.96 Da        Isoelectric Point: 7.3866

>NTDB_id=301481 ETT66_RS04900 WP_136286235.1 971546..972226(-) (radC) [Streptococcus pyogenes strain emm65]
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSIIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=301481 ETT66_RS04900 WP_136286235.1 971546..972226(-) (radC) [Streptococcus pyogenes strain emm65]
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTATCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(10-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.522

100

0.575
  radC Streptococcus pneumoniae R6

57.08

100

0.571
  radC Streptococcus pneumoniae D39

57.08

100

0.571
  radC Streptococcus gordonii str. Challis substr. CH1

56.195

100

0.562
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.119

96.46

0.416
  radC Haemophilus influenzae Rd KW20

37.443

96.903

0.363

Multiple sequence alignment