Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DPR03_RS00915 Genome accession   NZ_CP030754
Coordinates   191760..193247 (-) Length   495 a.a.
NCBI ID   WP_071319752.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 186760..198247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS00885 - 186839..187237 (+) 399 WP_004810187.1 MAPEG family protein -
  DPR03_RS00890 ppa 187358..187894 (+) 537 WP_004281037.1 inorganic diphosphatase -
  DPR03_RS00895 - 187994..189319 (-) 1326 WP_004810184.1 OprD family outer membrane porin -
  DPR03_RS00900 - 189829..190203 (+) 375 WP_071319751.1 TorF family putative porin -
  DPR03_RS00905 - 190187..190594 (+) 408 WP_228715843.1 hypothetical protein -
  DPR03_RS00910 - 190967..191701 (+) 735 WP_004810177.1 TorF family putative porin -
  DPR03_RS00915 comM 191760..193247 (-) 1488 WP_071319752.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DPR03_RS00920 - 193312..193539 (-) 228 WP_004810171.1 accessory factor UbiK family protein -
  DPR03_RS00925 glnK 193816..194154 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  DPR03_RS00930 - 194214..195620 (+) 1407 WP_071319753.1 ammonium transporter -
  DPR03_RS00935 nrdR 195760..196227 (+) 468 WP_004810168.1 transcriptional regulator NrdR -
  DPR03_RS00940 ribD 196230..197318 (+) 1089 WP_004896403.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54605.74 Da        Isoelectric Point: 7.9534

>NTDB_id=301305 DPR03_RS00915 WP_071319752.1 191760..193247(-) (comM) [Acinetobacter schindleri strain H3]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLAQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPRTGKTLLASRLASILPPLNT
KENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQMQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=301305 DPR03_RS00915 WP_071319752.1 191760..193247(-) (comM) [Acinetobacter schindleri strain H3]
ATGTCTTTTGCTAAAATCCATACCCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTAGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGCCCCATCACTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTTCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGCCCAGATGCAAGCCCGGCCACAGGTAAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTAGAACCGGTAAAACTTTACTGGCTTCGCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
AAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAGCGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACGCTGGCACATCTAG
GTGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTACTACGTCAACCTTTGGAATCTAAGGAA
ATTGTAATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCTTTCAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTACCACCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATGCAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGAGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.705

100

0.531
  comM Glaesserella parasuis strain SC1401

50.794

100

0.517
  comM Vibrio cholerae strain A1552

51.515

100

0.515
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment