Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C1S65_RS00910 Genome accession   NZ_CP030750
Coordinates   187733..189220 (-) Length   495 a.a.
NCBI ID   WP_112897088.1    Uniprot ID   A0AAD0L5B2
Organism   Pseudomonas putida strain NX-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182733..194220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S65_RS00885 (C1S65_00885) - 182815..183633 (+) 819 WP_063542079.1 alpha/beta hydrolase -
  C1S65_RS00890 (C1S65_00890) - 183903..184187 (+) 285 WP_081255182.1 HigA family addiction module antitoxin -
  C1S65_RS00895 (C1S65_00895) - 184278..186065 (-) 1788 WP_112897087.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  C1S65_RS00900 (C1S65_00900) - 186285..187301 (-) 1017 WP_054893704.1 alpha/beta hydrolase -
  C1S65_RS00905 (C1S65_00905) - 187335..187589 (-) 255 WP_063542083.1 DUF2790 domain-containing protein -
  C1S65_RS00910 (C1S65_00910) comM 187733..189220 (-) 1488 WP_112897088.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C1S65_RS00915 (C1S65_00915) leuA 189586..191283 (+) 1698 WP_112897089.1 2-isopropylmalate synthase -
  C1S65_RS00920 (C1S65_00920) - 191461..192720 (-) 1260 WP_063542093.1 biotin/lipoyl-binding protein -
  C1S65_RS00925 (C1S65_00925) - 192713..194191 (-) 1479 WP_112897090.1 TolC family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52975.80 Da        Isoelectric Point: 8.2586

>NTDB_id=301246 C1S65_RS00910 WP_112897088.1 187733..189220(-) (comM) [Pseudomonas putida strain NX-1]
MSLALVHSRAQVGVLAPAVSVETHLANGLPNLTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLVDFECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
QELVAHLNGQAPLPAYAANGLMLRARPYPDLSEVQGQIAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPIDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVISRARDRVRFPARFQLVAAMNPCPCGYLGDPAARCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTTLSHQPSG
ETSASVAAQVAQTRERQQRRQGCTNAFLDMPGLRKHCDLKAADQSWLESACERLNLSLRAAHRLLKVARTLADLEQAERI
ARPHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=301246 C1S65_RS00910 WP_112897088.1 187733..189220(-) (comM) [Pseudomonas putida strain NX-1]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCTGGCGCCCGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCAACCTCACCCTGGTCGGCCTGCCCGAGGCCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGTGCCATCG
TCAATTCCGGCCTCGAATACCCGGCCCGACGCATCACCCAGAGTCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TACGACCTTGCCATCGCCTTGGGCATCCTCGCCGCCAACGGCCAGGTGCCGGTGGCGACCTTGGTCGATTTCGAATGCCT
GGGCGAGTTGGCGCTATCCGGGGCATTGCGCCCGGTGCAGGGCGTGCTGCCAGCGGCGCTGGCGGCGCGGGAGGCCGGGC
GGGCACTGGTGGTGCCGCGGGAGAATGCCGAGGAGGCGAGTTTGGCCAGTGGGCTGGTGGTGTATGCGGTCGGGCACCTG
CAGGAGCTGGTAGCACATCTCAATGGCCAGGCACCGCTGCCAGCCTATGCCGCCAATGGCTTGATGCTACGCGCGCGCCC
CTATCCGGACCTGAGCGAAGTACAGGGGCAGATCGCGGCCAAGCGCGCCCTTCTGGTCGCGGCGGCGGGGGCGCACAATC
TGCTGTTTACCGGGCCACCCGGCACTGGCAAGACCTTGCTTGCCAGCCGCCTGCCGGGCTTGCTGCCGCCGCTGGACGAG
CACGAGGCGCTGGAGGTTGCGGCCATCCAGTCGGTCAGCGGCAAGGCACCGATCGACTGCTGGCCACAGCGGCCGTTTCG
CCATCCTCATCACAGCGCGTCGGGCCCGGCACTGGTCGGTGGCGGCAGTCGGCCGCAGCCTGGGGAAATCACCCTGGCCC
ATCATGGGGTGCTGTTTCTTGACGAACTGCCCGAGTTCGAACGTCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGAGAGATCGTGATTTCACGGGCCCGGGACCGGGTGCGCTTTCCTGCGCGCTTTCAGCTTGTAGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCGGCAGCCCGCTGCCGGTGCAGCCCTGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CGGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCACGCGAAAGCACCACCCTCAGCCACCAGCCCAGTGGC
GAGACCAGCGCCAGCGTCGCCGCCCAGGTCGCCCAGACCCGCGAGCGGCAACAGCGCCGCCAGGGTTGTACCAACGCGTT
TCTCGATATGCCAGGCCTGCGCAAACATTGCGACCTGAAAGCCGCCGACCAGTCATGGTTGGAGAGCGCGTGCGAGCGAC
TCAACCTTTCGTTGCGCGCCGCTCACCGTCTGCTCAAGGTCGCCCGCACCCTCGCCGACCTCGAACAAGCCGAGCGCATC
GCCCGCCCCCATCTGGCTGAGGCCCTGCAATACCGCCCCGGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.734

100

0.56
  comM Vibrio cholerae strain A1552

55.444

100

0.556
  comM Haemophilus influenzae Rd KW20

54.91

100

0.554
  comM Glaesserella parasuis strain SC1401

53.386

100

0.541
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.41

100

0.481

Multiple sequence alignment