Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSB67_RS03860 Genome accession   NZ_CP030347
Coordinates   552603..553133 (-) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter hormaechei strain AR_038     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 547603..558133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB67_RS03835 (CSB67_0564) soxR 547695..548153 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  CSB67_RS03840 (CSB67_0565) soxS 548252..548578 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  CSB67_RS03845 (CSB67_0566) - 548585..550150 (-) 1566 WP_032620743.1 EAL domain-containing protein -
  CSB67_RS03850 (CSB67_0567) - 550416..551816 (-) 1401 WP_032620549.1 sensor domain-containing diguanylate cyclase -
  CSB67_RS03855 - 552260..552541 (+) 282 WP_003860282.1 YjcB family protein -
  CSB67_RS03860 (CSB67_0571) ssb 552603..553133 (-) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CSB67_RS03870 (CSB67_0572) uvrA 553385..556207 (+) 2823 WP_015570187.1 excinuclease ABC subunit UvrA -
  CSB67_RS03875 (CSB67_0573) - 556211..556564 (-) 354 WP_032620552.1 MmcQ/YjbR family DNA-binding protein -
  CSB67_RS03880 (CSB67_0574) - 556567..556983 (-) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CSB67_RS03885 (CSB67_0575) aphA 557096..557809 (-) 714 WP_017382626.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=300966 CSB67_RS03860 WP_006177466.1 552603..553133(-) (ssb) [Enterobacter hormaechei strain AR_038]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=300966 CSB67_RS03860 WP_006177466.1 552603..553133(-) (ssb) [Enterobacter hormaechei strain AR_038]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment