Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | CSC44_RS20280 | Genome accession | NZ_CP030327 |
| Coordinates | 4261298..4261834 (+) | Length | 178 a.a. |
| NCBI ID | WP_025921208.1 | Uniprot ID | Q8KQ36 |
| Organism | Pseudomonas aeruginosa strain AR_458 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4256298..4266834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC44_RS20255 (CSC44_4089) | yacG | 4256467..4256667 (-) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| CSC44_RS20260 (CSC44_4090) | coaE | 4256664..4257275 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| CSC44_RS20265 (CSC44_4091) | pilD | 4257272..4258144 (-) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| CSC44_RS20270 (CSC44_4092) | pilC | 4258147..4259364 (-) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| CSC44_RS20275 (CSC44_4093) | pilB | 4259368..4261071 (-) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CSC44_RS20280 | pilE | 4261298..4261834 (+) | 537 | WP_025921208.1 | pilin | Machinery gene |
| CSC44_RS31895 | tfpZ | 4261899..4262636 (+) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| CSC44_RS20290 (CSC44_4095) | nadC | 4262870..4263718 (-) | 849 | WP_017148538.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CSC44_RS20295 (CSC44_4097) | - | 4264004..4266259 (+) | 2256 | WP_003104913.1 | DUF1631 domain-containing protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18322.83 Da Isoelectric Point: 4.9984
>NTDB_id=300890 CSC44_RS20280 WP_025921208.1 4261298..4261834(+) (pilE) [Pseudomonas aeruginosa strain AR_458]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
Nucleotide
Download Length: 537 bp
>NTDB_id=300890 CSC44_RS20280 WP_025921208.1 4261298..4261834(+) (pilE) [Pseudomonas aeruginosa strain AR_458]
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
43.719 |
100 |
0.489 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.556 |
100 |
0.41 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.341 |
98.876 |
0.399 |
| pilA2 | Legionella pneumophila str. Paris |
39.773 |
98.876 |
0.393 |