Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHD70_RS09645 Genome accession   NZ_CP030203
Coordinates   1851829..1852335 (-) Length   168 a.a.
NCBI ID   WP_043856290.1    Uniprot ID   A0A3V5IHV4
Organism   Salmonella enterica strain SA20083530     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1846829..1857335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD70_RS09580 (CHD70_09585) - 1846860..1847063 (-) 204 WP_001208732.1 hypothetical protein -
  CHD70_RS09590 (CHD70_09595) - 1847160..1847795 (-) 636 WP_114046925.1 Eac protein -
  CHD70_RS28270 (CHD70_09600) - 1847866..1848150 (-) 285 WP_205318796.1 ASCH domain-containing protein -
  CHD70_RS09595 (CHD70_09605) - 1848143..1848829 (-) 687 WP_205318797.1 DUF551 domain-containing protein -
  CHD70_RS09600 (CHD70_09610) - 1848840..1849046 (-) 207 WP_057515929.1 hypothetical protein -
  CHD70_RS09605 (CHD70_09615) - 1849049..1849273 (-) 225 WP_114046926.1 hypothetical protein -
  CHD70_RS09610 (CHD70_09620) - 1849276..1849653 (-) 378 WP_162803240.1 ead/Ea22-like family protein -
  CHD70_RS09615 (CHD70_09625) - 1849650..1849922 (-) 273 WP_114046927.1 antitoxin -
  CHD70_RS09620 (CHD70_09630) - 1849919..1850281 (-) 363 WP_114046928.1 DUF5448 family protein -
  CHD70_RS09625 (CHD70_09635) - 1850278..1850784 (-) 507 WP_114046929.1 ead/Ea22-like family protein -
  CHD70_RS09630 (CHD70_09640) - 1850781..1850951 (-) 171 WP_114047551.1 DUF2737 family protein -
  CHD70_RS09635 (CHD70_09645) - 1850962..1851255 (-) 294 WP_114046930.1 phage anti-RecBCD protein -
  CHD70_RS09640 (CHD70_09650) - 1851272..1851820 (-) 549 WP_001016182.1 3'-5' exonuclease -
  CHD70_RS09645 (CHD70_09655) ssb 1851829..1852335 (-) 507 WP_043856290.1 single-stranded DNA-binding protein Machinery gene
  CHD70_RS09650 (CHD70_09660) - 1852336..1853043 (-) 708 WP_114046931.1 Rad52/Rad22 family DNA repair protein -
  CHD70_RS09655 (CHD70_09665) - 1853052..1853240 (-) 189 WP_000613341.1 hypothetical protein -
  CHD70_RS28275 - 1853325..1853495 (-) 171 WP_001183771.1 hypothetical protein -
  CHD70_RS09665 (CHD70_09675) - 1853735..1854358 (-) 624 WP_114046933.1 Nmad5 family putative nucleotide modification protein -
  CHD70_RS09670 (CHD70_09680) - 1854395..1854595 (-) 201 WP_000246164.1 antirestriction Ral family protein -
  CHD70_RS09680 (CHD70_09690) - 1854935..1855273 (-) 339 WP_114046934.1 hypothetical protein -
  CHD70_RS09685 (CHD70_09695) - 1855628..1856290 (-) 663 WP_023135942.1 LexA family transcriptional regulator -
  CHD70_RS09690 (CHD70_09700) - 1856409..1856624 (+) 216 WP_000067726.1 helix-turn-helix transcriptional regulator -
  CHD70_RS09695 (CHD70_09705) - 1856733..1857023 (+) 291 WP_057518171.1 CII family transcriptional regulator -
  CHD70_RS28280 - 1857044..1857205 (+) 162 WP_000166968.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18809.01 Da        Isoelectric Point: 6.8829

>NTDB_id=300059 CHD70_RS09645 WP_043856290.1 1851829..1852335(-) (ssb) [Salmonella enterica strain SA20083530]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVAVVGKLAEVVGQYVKKGDQIYF
EGMLRTRKWQDQTGQDRYTTEINVGINGVMQMLGGTGDSKQQAADRQSQKPQQQSSPTQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI

Nucleotide


Download         Length: 507 bp        

>NTDB_id=300059 CHD70_RS09645 WP_043856290.1 1851829..1852335(-) (ssb) [Salmonella enterica strain SA20083530]
ATGGCTAGTAGAGGCGTAAATAAGGTGATCATCTTAGGCCGGGTCGGACAAGACCCGGAGGTTCGTTATTCACCATCAGG
GACGGCGTTCGCTAACCTGACAGTCGCTACATCAGAGCAGTGGCGAGATAAACAGACTGGCGAACAAAAGGAGCAGACTG
AATGGCATCGTGTTGCCGTAGTCGGGAAACTTGCTGAAGTCGTAGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGCAAGACCAGACAGGGCAAGACCGCTACACCACTGAGATTAATGTTGGAATTAA
TGGTGTGATGCAAATGCTTGGAGGTACTGGCGACAGCAAACAACAAGCAGCCGACAGGCAGTCACAGAAACCACAGCAGC
AATCATCACCAACACAACATAACGAGCCACCGATGGATTTTGATGATGATATACCATTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V5IHV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.887

100

0.631
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.506
  ssb Neisseria meningitidis MC58

39.773

100

0.417
  ssb Neisseria gonorrhoeae MS11

39.773

100

0.417

Multiple sequence alignment