Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   DP111_RS00830 Genome accession   NZ_CP030124
Coordinates   128626..128919 (+) Length   97 a.a.
NCBI ID   WP_024394703.1    Uniprot ID   -
Organism   Streptococcus suis strain SH1510     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123626..133919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP111_RS00800 (DP111_00800) - 124648..125013 (+) 366 WP_002936568.1 DUF1033 family protein -
  DP111_RS00805 (DP111_00805) - 125048..125998 (-) 951 WP_024394700.1 S66 peptidase family protein -
  DP111_RS00810 (DP111_00810) comYA 126084..127034 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  DP111_RS00815 (DP111_00815) comYB 126946..127983 (+) 1038 WP_043032925.1 competence type IV pilus assembly protein ComGB Machinery gene
  DP111_RS00820 (DP111_00820) comYC 127985..128266 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  DP111_RS00825 (DP111_00825) comGD 128247..128654 (+) 408 WP_024394702.1 competence type IV pilus minor pilin ComGD -
  DP111_RS00830 (DP111_00830) comYE 128626..128919 (+) 294 WP_024394703.1 competence type IV pilus minor pilin ComGE Machinery gene
  DP111_RS00835 (DP111_00835) comGF/cglF 128906..129340 (+) 435 WP_029750050.1 competence type IV pilus minor pilin ComGF Machinery gene
  DP111_RS00840 (DP111_00840) comGG 129318..129728 (+) 411 WP_024394705.1 competence type IV pilus minor pilin ComGG -
  DP111_RS00845 (DP111_00845) comYH 129785..130738 (+) 954 WP_024394706.1 class I SAM-dependent methyltransferase Machinery gene
  DP111_RS00850 (DP111_00850) - 130788..131975 (+) 1188 WP_014637319.1 acetate kinase -
  DP111_RS00855 (DP111_00855) - 132290..132841 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10771.63 Da        Isoelectric Point: 9.8348

>NTDB_id=299415 DP111_RS00830 WP_024394703.1 128626..128919(+) (comYE) [Streptococcus suis strain SH1510]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVKRTAD
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=299415 DP111_RS00830 WP_024394703.1 128626..128919(+) (comYE) [Streptococcus suis strain SH1510]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTTTGGTTGCCCTTGCGACCCTGGTAACCAT
TTGCAGCTTGATTTTGTCAGCGGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCTCAGATGGCTGTCCAGACCGAGCAAGATAACTTAGCCTTAAACGGTGTTACAGTTCAGGTGAAACGAACGGCGGAC
AGGGTTGCGGTTTTCCATGAGGGGAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment