Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ETA18_RS14320 Genome accession   NZ_CP035400
Coordinates   2729742..2730437 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2724742..2735437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS14295 (ETA18_14295) minD 2725678..2726484 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  ETA18_RS14300 (ETA18_14300) minC 2726486..2727166 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ETA18_RS14305 (ETA18_14305) mreD 2727219..2727737 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ETA18_RS14310 (ETA18_14310) mreC 2727734..2728606 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  ETA18_RS14315 (ETA18_14315) mreB 2728637..2729650 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ETA18_RS14320 (ETA18_14320) ysxA/radC 2729742..2730437 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  ETA18_RS14325 (ETA18_14325) maf 2730474..2731043 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ETA18_RS14330 (ETA18_14330) spoIIB 2731196..2732194 (-) 999 WP_095843864.1 stage II sporulation protein SpoIIB -
  ETA18_RS14335 (ETA18_14335) comC 2732327..2733073 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ETA18_RS14340 (ETA18_14340) folC 2733214..2734506 (-) 1293 WP_043856952.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=299374 ETA18_RS14320 WP_014480455.1 2729742..2730437(-) (ysxA/radC) [Bacillus subtilis strain SRCM103835]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=299374 ETA18_RS14320 WP_014480455.1 2729742..2730437(-) (ysxA/radC) [Bacillus subtilis strain SRCM103835]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment