Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SPP_RS06640 Genome accession   NC_012467
Coordinates   1257223..1257864 (-) Length   213 a.a.
NCBI ID   WP_000151483.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252223..1262864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS06610 (SPP_1339) - 1252343..1252585 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  SPP_RS06615 (SPP_1340) - 1252642..1253220 (-) 579 WP_000252109.1 hypothetical protein -
  SPP_RS06620 - 1253195..1254207 (-) 1013 Protein_1275 Dyp-type peroxidase -
  SPP_RS12090 (SPP_1343) - 1254177..1254668 (-) 492 Protein_1276 winged helix-turn-helix domain-containing protein -
  SPP_RS06630 (SPP_1344) gdhA 1255198..1256544 (+) 1347 WP_000199558.1 NADP-specific glutamate dehydrogenase -
  SPP_RS06635 (SPP_1345) - 1257040..1257210 (-) 171 WP_000711943.1 hypothetical protein -
  SPP_RS06640 (SPP_1346) comA 1257223..1257864 (-) 642 WP_000151483.1 ATP-binding cassette domain-containing protein Regulator
  SPP_RS13870 - 1257989..1258176 (-) 188 Protein_1280 hypothetical protein -
  SPP_RS06645 (SPP_1347) - 1258463..1259809 (-) 1347 WP_001845280.1 IS1380-like element ISSpn5 family transposase -
  SPP_RS06650 (SPP_1348) - 1259986..1260441 (+) 456 WP_000459732.1 transposase -
  SPP_RS06655 (SPP_1349) - 1260591..1260785 (-) 195 Protein_1283 ROK family protein -
  SPP_RS06660 (SPP_1350) - 1260812..1261729 (-) 918 WP_001281465.1 dihydrodipicolinate synthase family protein -
  SPP_RS06665 (SPP_1351) - 1261761..1262168 (-) 408 WP_000216069.1 cytidine deaminase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23486.26 Da        Isoelectric Point: 9.2387

>NTDB_id=29906 SPP_RS06640 WP_000151483.1 1257223..1257864(-) (comA) [Streptococcus pneumoniae P1031]
MTIESGQRIALVGQPGSGKSTLSKIPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEV
TSQKIEEVCKAVQIYDEIMAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKS
QGCTQIIVAHRLSTIKDADIIVVMKGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=29906 SPP_RS06640 WP_000151483.1 1257223..1257864(-) (comA) [Streptococcus pneumoniae P1031]
TTGACTATTGAGTCAGGACAGAGAATTGCACTAGTCGGTCAACCGGGGTCAGGAAAAAGTACATTATCAAAAATACCATC
AGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTC
AAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGCACGAAGTT
ACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATAC
TATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAATAAATAATC
CTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATATAAAAAGT
CAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATGAAAGGTGG
TAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAAT
GA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

43.333

98.592

0.427
  comA Streptococcus mitis SK321

42.857

98.592

0.423
  comA Streptococcus gordonii str. Challis substr. CH1

41.981

99.531

0.418
  comA/nlmT Streptococcus mutans UA159

41.981

99.531

0.418
  comA Streptococcus pneumoniae R6

41.905

98.592

0.413
  comA Streptococcus pneumoniae Rx1

41.905

98.592

0.413
  comA Streptococcus pneumoniae D39

41.905

98.592

0.413
  comA Streptococcus pneumoniae TIGR4

40.952

98.592

0.404
  rcrQ Streptococcus mutans UA159

36.62

100

0.366

Multiple sequence alignment