Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPF84_RS07820 Genome accession   NZ_CP030076
Coordinates   1549649..1550173 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 20710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1544649..1555173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPF84_RS07795 (DPF84_07790) soxR 1544741..1545199 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  DPF84_RS07800 (DPF84_07795) soxS 1545298..1545624 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  DPF84_RS07805 (DPF84_07800) - 1545631..1547196 (-) 1566 WP_045346546.1 EAL domain-containing protein -
  DPF84_RS07810 (DPF84_07805) - 1547462..1548862 (-) 1401 WP_003860281.1 sensor domain-containing diguanylate cyclase -
  DPF84_RS07815 (DPF84_07810) - 1549306..1549587 (+) 282 WP_003860282.1 YjcB family protein -
  DPF84_RS07820 (DPF84_07815) ssb 1549649..1550173 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DPF84_RS07830 (DPF84_07825) uvrA 1550425..1553247 (+) 2823 WP_045346547.1 excinuclease ABC subunit UvrA -
  DPF84_RS07835 (DPF84_07830) - 1553251..1553604 (-) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  DPF84_RS07840 (DPF84_07835) - 1553607..1554023 (-) 417 WP_058672776.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DPF84_RS07845 (DPF84_07840) aphA 1554136..1554849 (-) 714 WP_003860292.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=298949 DPF84_RS07820 WP_003860284.1 1549649..1550173(-) (ssb) [Enterobacter hormaechei strain 20710]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=298949 DPF84_RS07820 WP_003860284.1 1549649..1550173(-) (ssb) [Enterobacter hormaechei strain 20710]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAATTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment