Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CT138_RS00680 Genome accession   NZ_CP030062
Coordinates   129906..130235 (+) Length   109 a.a.
NCBI ID   WP_112110132.1    Uniprot ID   -
Organism   Mannheimia varigena strain Teagasc     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124906..135235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT138_RS00655 (CT138_00655) rpsL 125191..125565 (-) 375 WP_005708967.1 30S ribosomal protein S12 -
  CT138_RS00660 (CT138_00660) rfaC 125685..126644 (-) 960 WP_112110129.1 lipopolysaccharide heptosyltransferase RfaC -
  CT138_RS00665 (CT138_00665) waaF 126715..127752 (-) 1038 WP_112110130.1 lipopolysaccharide heptosyltransferase II -
  CT138_RS00670 (CT138_00670) - 127787..128206 (-) 420 WP_025218022.1 MliC family protein -
  CT138_RS00675 (CT138_00675) - 128265..129617 (-) 1353 WP_112110131.1 LysM-like peptidoglycan-binding domain-containing protein -
  CT138_RS00680 (CT138_00680) comEA/comE1 129906..130235 (+) 330 WP_112110132.1 ComEA family DNA-binding protein Machinery gene
  CT138_RS00685 (CT138_00685) asd 130397..131287 (+) 891 WP_112110133.1 archaetidylserine decarboxylase -
  CT138_RS00690 (CT138_00690) gshAB 131451..133727 (+) 2277 WP_112110134.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  CT138_RS00695 (CT138_00695) manX 134049..135026 (+) 978 WP_112110135.1 PTS mannose transporter subunit IIAB -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11906.58 Da        Isoelectric Point: 6.3012

>NTDB_id=298813 CT138_RS00680 WP_112110132.1 129906..130235(+) (comEA/comE1) [Mannheimia varigena strain Teagasc]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNTVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=298813 CT138_RS00680 WP_112110132.1 129906..130235(+) (comEA/comE1) [Mannheimia varigena strain Teagasc]
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAACACCGTAAACATCAACACCGCAAGTG
CTGCTGAATTGCAAGATAAGCTGGTAGGAATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGACAAGCAACGGTAGAAAAAAATCGAGCAAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.55
  comE1/comEA Haemophilus influenzae Rd KW20

47.321

100

0.486
  comEA Vibrio cholerae C6706

48.113

97.248

0.468
  comEA Vibrio cholerae strain A1552

48.113

97.248

0.468
  comEA Vibrio campbellii strain DS40M4

40.741

99.083

0.404

Multiple sequence alignment