Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MAE_RS14460 Genome accession   NC_010296
Coordinates   3048907..3049272 (-) Length   121 a.a.
NCBI ID   WP_002798118.1    Uniprot ID   -
Organism   Microcystis aeruginosa NIES-843     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3043907..3054272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAE_RS14445 (MAE_33430) - 3044232..3045443 (-) 1212 WP_012266252.1 glycosyltransferase -
  MAE_RS14450 (MAE_33440) pilJ 3045517..3048195 (-) 2679 WP_012266253.1 methyl-accepting chemotaxis protein Machinery gene
  MAE_RS14455 (MAE_33450) - 3048285..3048815 (-) 531 WP_002798117.1 chemotaxis protein CheW -
  MAE_RS14460 (MAE_33460) pilH 3048907..3049272 (-) 366 WP_002798118.1 response regulator transcription factor Machinery gene
  MAE_RS14465 (MAE_33490) - 3050882..3052213 (+) 1332 WP_012266256.1 RNA-guided endonuclease InsQ/TnpB family protein -
  MAE_RS14470 (MAE_33500) hmpF 3052192..3053832 (+) 1641 WP_041804133.1 pilus motility taxis protein HmpF -
  MAE_RS32295 (MAE_33510) - 3053846..3054037 (+) 192 WP_044034744.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13879.30 Da        Isoelectric Point: 6.9277

>NTDB_id=29874 MAE_RS14460 WP_002798118.1 3048907..3049272(-) (pilH) [Microcystis aeruginosa NIES-843]
MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNGYEVCRRLKSDPKTKNVPVVI
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=29874 MAE_RS14460 WP_002798118.1 3048907..3049272(-) (pilH) [Microcystis aeruginosa NIES-843]
ATGAGCGAAATATTGCTGGTAGAAGACAGCCAAACGCAAAGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATTAA
GGTCACGATCGCCACGGATGGGGTGGAAGCCCTCGAACATATTCAGAGAGCCAATCCGGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCAAAAATGTCCCGGTGGTGATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
ACCGATTGAGTTCATTTATACCATTAAACAACTGTTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.667

99.174

0.711
  vicR Streptococcus mutans UA159

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364

Multiple sequence alignment