Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ES963_RS14400 Genome accession   NZ_CP035390
Coordinates   2650615..2651310 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SRCM103641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2645615..2656310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS14375 (ES963_14375) minD 2646551..2647357 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  ES963_RS14380 (ES963_14380) minC 2647359..2648039 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ES963_RS14385 (ES963_14385) mreD 2648092..2648610 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ES963_RS14390 (ES963_14390) mreC 2648607..2649479 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ES963_RS14395 (ES963_14395) mreB 2649510..2650523 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ES963_RS14400 (ES963_14400) ysxA/radC 2650615..2651310 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  ES963_RS14405 (ES963_14405) maf 2651347..2651916 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ES963_RS14410 (ES963_14410) spoIIB 2652069..2653067 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  ES963_RS14415 (ES963_14415) comC 2653201..2653947 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ES963_RS14420 (ES963_14420) folC 2654087..2655379 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=298616 ES963_RS14400 WP_003246034.1 2650615..2651310(-) (ysxA/radC) [Bacillus subtilis strain SRCM103641]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=298616 ES963_RS14400 WP_003246034.1 2650615..2651310(-) (ysxA/radC) [Bacillus subtilis strain SRCM103641]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCACCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGAAGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424