Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DOM21_RS00120 Genome accession   NZ_CP030035
Coordinates   22266..23642 (+) Length   458 a.a.
NCBI ID   WP_102245407.1    Uniprot ID   A0A2K9NX72
Organism   Bacteriovorax stolpii strain AC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 17266..28642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM21_RS00100 (DOM21_00100) - 17275..18453 (-) 1179 WP_102245411.1 patatin-like phospholipase family protein -
  DOM21_RS00105 (DOM21_00105) - 18594..18905 (+) 312 WP_102245410.1 hypothetical protein -
  DOM21_RS00110 (DOM21_00110) - 18902..20365 (+) 1464 WP_142408815.1 hypothetical protein -
  DOM21_RS00115 (DOM21_00115) ligA 20381..22258 (+) 1878 WP_142408816.1 NAD-dependent DNA ligase LigA -
  DOM21_RS00120 (DOM21_00120) radA 22266..23642 (+) 1377 WP_102245407.1 DNA repair protein RadA Machinery gene
  DOM21_RS00125 (DOM21_00125) - 23646..23840 (+) 195 WP_102245406.1 hypothetical protein -
  DOM21_RS00130 (DOM21_00130) glpK 23833..25323 (-) 1491 WP_142408817.1 glycerol kinase GlpK -
  DOM21_RS00135 (DOM21_00135) - 25359..25565 (-) 207 WP_102245404.1 hypothetical protein -
  DOM21_RS00140 (DOM21_00140) - 25599..26156 (+) 558 WP_102245403.1 TlpA disulfide reductase family protein -
  DOM21_RS00145 (DOM21_00145) - 26157..26528 (-) 372 WP_158649757.1 Kazal-type serine protease inhibitor family protein -
  DOM21_RS00150 (DOM21_00150) hutI 26584..27795 (-) 1212 WP_102245401.1 imidazolonepropionase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50880.24 Da        Isoelectric Point: 7.6750

>NTDB_id=298617 DOM21_RS00120 WP_102245407.1 22266..23642(+) (radA) [Bacteriovorax stolpii strain AC01]
MAKKTSTFICQSCSYQTSKWMGKCPECGSWNSFTEETTVAAKDLNRAHKRTALGGEAPKLINEIVLEKQFRVVTGMGEFD
RVVGGGVVPGSLILIGGEPGIGKSTLLTAIMGRLSQSHAGQTVLYVSGEESVNQVAERSKRVGVNADNFYIYNETNWQKI
LEQINKLQPRFLVIDSIQTTSSSEIDSAPGTVSQIREVTYELMNHVKANGITCFVIGHITKEGSIAGPKILEHMVDTVIY
FEGDQFGHYRILRAMKNRFGNTNEVGIFEMKESGLDEVKNPSQYFLDDQLKESFGRSLTCIIEGSRSLFVEVQALVVDNK
FGNGRRTTHGIDNNRLSMMVAVIEKYFGLPLGFNDIYLNVVGGMKLTTRESDLSIIASLLSSYRSKPIDSSTIFVGEVGL
TGEVRSIPQMEMRIKEMAQLNYKRVVTSEKTARELKGKYDIEIIGLRQARDLDQFIGK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=298617 DOM21_RS00120 WP_102245407.1 22266..23642(+) (radA) [Bacteriovorax stolpii strain AC01]
ATGGCCAAAAAGACCTCAACGTTCATTTGTCAGAGTTGTTCATACCAAACTTCAAAGTGGATGGGGAAATGTCCAGAGTG
TGGATCGTGGAACTCATTTACCGAAGAGACGACTGTTGCGGCCAAAGATCTAAATCGCGCTCATAAAAGAACGGCATTAG
GAGGGGAAGCCCCAAAGCTGATTAATGAAATCGTTTTAGAAAAGCAGTTTAGAGTTGTGACGGGAATGGGAGAATTTGAC
CGCGTTGTGGGTGGCGGGGTTGTTCCAGGATCACTGATTCTTATCGGTGGTGAGCCAGGAATTGGAAAATCGACACTGCT
TACGGCGATTATGGGAAGACTTTCTCAATCACATGCAGGGCAGACTGTTCTCTATGTGAGTGGGGAAGAATCTGTTAACC
AGGTGGCGGAAAGATCAAAGAGAGTTGGTGTTAATGCTGACAATTTCTATATTTATAACGAAACAAACTGGCAGAAGATT
TTAGAGCAAATCAATAAACTTCAGCCGCGCTTTTTAGTTATCGACTCAATTCAGACGACGTCATCATCTGAAATTGATTC
AGCACCGGGAACGGTGTCTCAGATTCGCGAAGTGACTTATGAACTTATGAATCACGTGAAGGCCAATGGGATTACGTGTT
TTGTTATCGGTCACATCACGAAAGAAGGATCTATCGCCGGGCCAAAAATCCTTGAGCACATGGTCGATACTGTAATTTAT
TTTGAAGGGGATCAGTTTGGTCACTACAGAATTCTTCGCGCGATGAAAAACCGCTTCGGAAATACCAACGAGGTCGGGAT
TTTTGAAATGAAAGAAAGTGGGTTGGATGAAGTTAAAAATCCATCTCAATACTTTCTTGATGATCAATTAAAAGAATCTT
TTGGGCGCTCGTTGACTTGTATCATTGAAGGATCGCGCTCTCTCTTTGTAGAGGTTCAAGCGTTGGTTGTTGATAATAAG
TTTGGTAATGGGCGCAGGACAACTCACGGAATTGATAACAATCGCCTTTCAATGATGGTGGCCGTTATTGAAAAATATTT
CGGCTTGCCATTGGGTTTTAACGATATTTACTTAAACGTAGTTGGGGGAATGAAGCTAACGACAAGAGAGTCGGATCTCT
CGATCATTGCTTCTCTTTTAAGTTCATACCGTTCAAAACCAATTGACTCGAGCACGATTTTTGTCGGAGAGGTTGGGTTA
ACGGGGGAAGTTCGCTCGATTCCTCAGATGGAAATGAGAATTAAAGAAATGGCCCAGCTCAATTACAAACGAGTGGTCAC
TTCAGAAAAAACGGCCAGAGAGTTAAAAGGTAAATACGATATCGAGATCATAGGCCTTCGCCAGGCGCGAGACCTAGATC
AGTTTATCGGGAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9NX72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.554

98.472

0.498
  radA Streptococcus mitis SK321

49.777

97.817

0.487
  radA Streptococcus mitis NCTC 12261

49.777

97.817

0.487
  radA Streptococcus pneumoniae Rx1

49.777

97.817

0.487
  radA Streptococcus pneumoniae D39

49.777

97.817

0.487
  radA Streptococcus pneumoniae R6

49.777

97.817

0.487
  radA Streptococcus pneumoniae TIGR4

49.777

97.817

0.487

Multiple sequence alignment