Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DOM24_RS00700 Genome accession   NZ_CP030031
Coordinates   154783..156267 (-) Length   494 a.a.
NCBI ID   WP_034675882.1    Uniprot ID   A0A8H2K1S5
Organism   Acinetobacter radioresistens strain LH6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 149783..161267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00675 (DOM24_00675) - 150489..150869 (-) 381 WP_005017201.1 membrane protein -
  DOM24_RS00680 (DOM24_00680) - 150978..151376 (+) 399 WP_034688770.1 MAPEG family protein -
  DOM24_RS00685 (DOM24_00685) ppa 151495..152031 (+) 537 WP_005017195.1 inorganic diphosphatase -
  DOM24_RS00690 (DOM24_00690) - 152128..153396 (-) 1269 WP_111280125.1 OprD family outer membrane porin -
  DOM24_RS00695 (DOM24_00695) - 153961..154728 (+) 768 WP_034688773.1 TorF family putative porin -
  DOM24_RS00700 (DOM24_00700) comM 154783..156267 (-) 1485 WP_034675882.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DOM24_RS00705 (DOM24_00705) - 156331..156558 (-) 228 WP_034675884.1 accessory factor UbiK family protein -
  DOM24_RS00710 (DOM24_00710) glnK 156828..157166 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  DOM24_RS00715 (DOM24_00715) - 157225..158607 (+) 1383 WP_111280127.1 ammonium transporter -
  DOM24_RS00720 (DOM24_00720) nrdR 158729..159181 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  DOM24_RS00725 (DOM24_00725) ribD 159233..160288 (+) 1056 WP_111280129.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54296.60 Da        Isoelectric Point: 8.6572

>NTDB_id=298555 DOM24_RS00700 WP_034675882.1 154783..156267(-) (comM) [Acinetobacter radioresistens strain LH6]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLSEAAQDYKLDLADIKGQLRPRRALEIAAAGSHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLIAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQGCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=298555 DOM24_RS00700 WP_034675882.1 154783..156267(-) (comM) [Acinetobacter radioresistens strain LH6]
ATGTCTTTTGCCAAAATTTATACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCTTCCCTGACTATTGTAGGGCTTCCTGAAGCCGCAGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGCCTTACTATTAACCTGGCTCCTGCCGATTTGCCCAAAGATGGTTCACGT
CTAGATCTACCGATTGCCTTGGGAATCTTGGTTGCTTCAGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTCTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCATGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATCTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTATCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGACAACTGCGCCCACGGCGTGCTCTGGAAATTGCAGCAGCAGGCAGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCTAAGCCTGGTGAAATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAGGAA
ATTGTTATTTCTCGGGCCTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGATAGCCGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCCGATGCAATCAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGATCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACCACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATTTTAGCTTATGAACAACAGCTCCAACGCCAGGGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCATCGGGTTTTACGTGTAGCCAGAACAATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52

100

0.526
  comM Vibrio campbellii strain DS40M4

51.4

100

0.52
  comM Glaesserella parasuis strain SC1401

51.195

100

0.52
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.474

Multiple sequence alignment