Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   DK875_RS01925 Genome accession   NZ_CP030020
Coordinates   370806..372596 (+) Length   596 a.a.
NCBI ID   WP_013730559.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 365806..377596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS01910 (DK875_01995) sufU 366873..367313 (+) 441 WP_002938153.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DK875_RS01915 (DK875_02000) sufB 367663..369078 (+) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  DK875_RS01920 (DK875_02005) pbp3 369352..370593 (-) 1242 WP_002938148.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DK875_RS01925 (DK875_02010) oppA 370806..372596 (+) 1791 WP_013730559.1 oligopeptide ABC transporter substrate-binding protein Regulator
  DK875_RS01930 (DK875_02015) - 372973..373971 (+) 999 WP_002938146.1 ABC transporter ATP-binding protein -
  DK875_RS01935 (DK875_02020) - 373974..374915 (+) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  DK875_RS01940 (DK875_02025) opp4B 374917..375873 (+) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  DK875_RS01945 (DK875_02030) - 375887..376789 (+) 903 WP_002938141.1 ABC transporter permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65812.86 Da        Isoelectric Point: 4.6364

>NTDB_id=298355 DK875_RS01925 WP_013730559.1 370806..372596(+) (oppA) [Streptococcus suis strain ISU2514]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISMFGYDGERKLDDSGLAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYI
SFNLGKYDEAANKNVMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDPAID
MYAGGWSTGYDPNPSGLWGSVAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=298355 DK875_RS01925 WP_013730559.1 370806..372596(+) (oppA) [Streptococcus suis strain ISU2514]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGACTCAACA
TTTGGTGGTTTTGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAAAAAATCACAATTAGCTTGACAGGCAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGCATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGACCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTTTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGTTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATCTTGGTAAATATGACGAAGCAGCTAATAAGAACGTTATGGATGAAAAGGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGCAAATCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGGGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGCGTTCAAAATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTACAACTCAGTTCAAGCTAATGATCCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCAAGTGGTCTATGGGGGTCTGTCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.644

100

0.966

Multiple sequence alignment