Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A7J09_RS10095 Genome accession   NZ_CP030015
Coordinates   2089641..2090306 (-) Length   221 a.a.
NCBI ID   WP_002941737.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2084641..2095306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS10090 (A7J09_10290) hpf 2089021..2089563 (-) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A7J09_RS10095 (A7J09_10295) comFC/cflB 2089641..2090306 (-) 666 WP_002941737.1 ComF family protein Machinery gene
  A7J09_RS10100 (A7J09_10300) comFA/cflA 2090299..2091591 (-) 1293 WP_029178438.1 DEAD/DEAH box helicase Machinery gene
  A7J09_RS10105 (A7J09_10305) - 2091648..2092280 (+) 633 WP_024394374.1 YigZ family protein -
  A7J09_RS10110 (A7J09_10310) cysK 2092370..2093296 (+) 927 WP_029178437.1 cysteine synthase A -
  A7J09_RS10115 (A7J09_10315) - 2093322..2093693 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  A7J09_RS10120 (A7J09_10320) - 2093695..2095095 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25788.71 Da        Isoelectric Point: 8.6258

>NTDB_id=298276 A7J09_RS10095 WP_002941737.1 2089641..2090306(-) (comFC/cflB) [Streptococcus suis strain ISU2812]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=298276 A7J09_RS10095 WP_002941737.1 2089641..2090306(-) (comFC/cflB) [Streptococcus suis strain ISU2812]
ATGTCTAATTGTCTATTGTGCGCCCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTTCATACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATTAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48

Multiple sequence alignment