Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MEXT_RS11310 Genome accession   NC_010172
Coordinates   2492045..2492614 (-) Length   189 a.a.
NCBI ID   WP_012253693.1    Uniprot ID   B7L0Y9
Organism   Methylorubrum extorquens PA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2487045..2497614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEXT_RS11290 (Mext_2239) - 2487185..2489365 (-) 2181 Protein_2307 TonB-dependent siderophore receptor -
  MEXT_RS11295 (Mext_2240) panC 2489698..2490555 (-) 858 WP_012253691.1 pantoate--beta-alanine ligase -
  MEXT_RS11300 (Mext_2241) - 2490631..2490990 (-) 360 WP_012253692.1 hypothetical protein -
  MEXT_RS11305 (Mext_2242) - 2491063..2491668 (-) 606 WP_003603578.1 XRE family transcriptional regulator -
  MEXT_RS11310 (Mext_2243) ssb 2492045..2492614 (-) 570 WP_012253693.1 single-stranded DNA-binding protein Machinery gene
  MEXT_RS11315 (Mext_2244) - 2492849..2493865 (-) 1017 WP_012253694.1 NADP-dependent oxidoreductase -
  MEXT_RS11320 (Mext_2245) - 2493958..2494365 (+) 408 WP_012253695.1 DUF4174 domain-containing protein -
  MEXT_RS11325 (Mext_2246) - 2494416..2494982 (-) 567 WP_012253696.1 hypothetical protein -
  MEXT_RS11330 (Mext_2247) - 2495212..2495985 (+) 774 WP_003604644.1 phosphodiester glycosidase family protein -
  MEXT_RS11335 (Mext_2248) - 2496144..2497262 (-) 1119 WP_012253698.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20100.87 Da        Isoelectric Point: 6.0203

>NTDB_id=29751 MEXT_RS11310 WP_012253693.1 2492045..2492614(-) (ssb) [Methylorubrum extorquens PA1]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=29751 MEXT_RS11310 WP_012253693.1 2492045..2492614(-) (ssb) [Methylorubrum extorquens PA1]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCGGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGTGGCGGCGGCGACTTCGCGGGCGAGGACGAGGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGTGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGTGGTGGCGGCGGCGATCGCCGGCCCTCCTCGGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACAT
CCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L0Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.487
  ssb Vibrio cholerae strain A1552

48.649

97.884

0.476
  ssb Neisseria gonorrhoeae MS11

41.398

98.413

0.407
  ssb Neisseria meningitidis MC58

40.86

98.413

0.402

Multiple sequence alignment