Detailed information NTG0029732

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: BPET_RS00425
• Genome accession: NC_010170
• Coordinates: 97324..98763 (+)
• Length: 479 a.a.
• NCBI ID: WP_012247113.1
• Uniprot ID: -
• Organism: Bordetella petrii
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 92324..103763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BPET_RS00410 (Bpet0082)	-	92970..94265 (+)	1296	WP_012247111.1	amidase	-
BPET_RS00415 (Bpet0083)	leuA	94608..96317 (-)	1710	WP_085970189.1	2-isopropylmalate synthase	-
BPET_RS00420 (Bpet0084)	-	96684..97325 (-)	642	WP_012247114.1	hypothetical protein	-
BPET_RS00425 (Bpet0085)	rpoN/rpoN1	97324..98763 (+)	1440	WP_012247113.1	RNA polymerase factor sigma-54	Machinery gene
BPET_RS00430 (Bpet0086)	-	98862..99146 (+)	285	WP_012247115.1	bacterioferritin-associated ferredoxin	-
BPET_RS00435 (Bpet0087)	bfr	99508..99984 (+)	477	WP_012247116.1	bacterioferritin	-
BPET_RS00440 (Bpet0088)	-	100070..100732 (-)	663	WP_012247117.1	hypothetical protein	-
BPET_RS00445 (Bpet0089)	-	100765..102372 (-)	1608	WP_012247118.1	peptide chain release factor 3	-
BPET_RS00450 (Bpet0090)	-	102422..103051 (-)	630	WP_012247119.1	LysE family transporter	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 52363.45 Da
• Isoelectric Point: 5.2530

>NTDB_id=29732 BPET_RS00425 WP_012247113.1 97324..98763(+) (rpoN/rpoN1) [Bordetella petrii]
MQNIVPMTRPALELRTGQHLTLTPQLQQSIRLLQLSTLDLQAEISQALADNPMLERNDERSEAEVDAPTEREADIDAEPA
REAETRIDEMPGAGGVYPDDRPDGPDTARSDTLREHLLAQLGLTRAGRRDAALVSLLIDELDENGYLASPLEEILEWLPP
EAEADLDELRAALCLLQSFDPPGIGARDMAECLVLQLRNPDPSRLPEAADPTVLACARRLCADHLPLLAGGNAARLRDAL
QCDDATARAAHALIRRLDPRPGRAWTVPAADYAVPDVIVRKTRQGWQAVLNSAAVPRLQVNTLYAQLLGNQREASHAGLH
AQLQQARWMIRNVEQRFDTILRVAQAIVAHQSAFFSEGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELK
HFFGSGVATDAGDVASATAVQAVIRQMVAGEDRAKPLSDNQITQRLADQGIVIARRTVAKYREALRIAPASLRKAHAGR

Nucleotide

• Length: 1440 bp

>NTDB_id=29732 BPET_RS00425 WP_012247113.1 97324..98763(+) (rpoN/rpoN1) [Bordetella petrii]
ATGCAAAATATTGTACCTATGACCCGGCCCGCGTTAGAACTTCGTACCGGTCAACACCTGACGTTGACCCCCCAGCTGCA
ACAATCTATACGATTGCTGCAGCTTTCCACGCTGGACCTGCAGGCCGAGATCTCGCAGGCCCTGGCCGACAACCCCATGC
TGGAACGCAACGACGAACGGTCCGAAGCCGAGGTCGACGCGCCCACCGAGCGCGAAGCCGACATCGACGCCGAGCCCGCA
CGCGAGGCCGAGACCCGCATCGACGAAATGCCCGGCGCGGGCGGCGTATACCCCGACGACCGCCCCGACGGGCCCGATAC
GGCGCGCAGCGATACGCTGCGCGAGCACCTGCTGGCCCAGTTGGGGCTGACCCGGGCCGGACGGCGCGATGCCGCGCTGG
TAAGCCTGCTGATCGACGAACTGGACGAAAACGGCTATCTGGCCTCGCCGCTGGAGGAAATCCTGGAGTGGCTGCCGCCC
GAAGCCGAAGCCGACCTCGACGAGTTGCGCGCGGCCCTGTGCTTGCTGCAGTCGTTCGATCCGCCCGGCATCGGCGCGCG
GGACATGGCGGAATGCCTGGTGTTGCAATTGCGCAACCCCGACCCGTCGCGCCTGCCCGAAGCGGCTGATCCCACCGTGC
TGGCCTGCGCGCGCCGGTTGTGCGCCGACCACCTGCCGCTGCTGGCGGGCGGCAACGCGGCGCGCCTGCGCGACGCCTTG
CAATGCGACGACGCTACCGCCCGGGCCGCGCACGCCCTGATCCGCCGGCTTGACCCCCGCCCCGGTCGCGCCTGGACGGT
GCCGGCCGCCGATTACGCGGTGCCGGACGTCATCGTGCGCAAAACCCGGCAAGGCTGGCAGGCAGTGCTGAACAGCGCCG
CGGTGCCGCGCCTGCAGGTCAACACGCTGTATGCGCAACTGCTCGGCAACCAGCGCGAAGCCAGCCATGCGGGCCTGCAC
GCGCAACTGCAGCAGGCCCGCTGGATGATCCGCAATGTCGAGCAGCGCTTTGACACCATCCTGCGCGTGGCGCAGGCCAT
CGTTGCGCACCAGTCGGCGTTTTTCAGCGAAGGTCCGGCCGCCATGCGGCCGCTCATCTTGAAAGACATTGCCGGCGAGC
TGGGGCTGCACGAGTCCACCATTTCCCGCGCCACCACCCAGAAATACATGCTGACGCCGTTCGGCACGCTGGAACTCAAG
CATTTCTTCGGCAGCGGGGTGGCTACCGATGCCGGCGACGTCGCGTCGGCCACGGCCGTGCAGGCGGTCATCCGCCAGAT
GGTAGCGGGCGAAGACCGGGCCAAGCCGCTATCCGACAACCAGATCACCCAGCGGCTGGCCGACCAGGGCATCGTGATCG
CCCGCCGCACGGTTGCCAAGTACCGCGAAGCGTTGCGCATCGCGCCCGCCAGCCTGCGCAAGGCGCACGCCGGCCGTTAG

Domains

Predicted by InterproScan.

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

• Sigma-54, DNA binding domain (Sigma54_DBD) (319-474)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (108-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	49.605	100	0.524