Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQH24_RS06460 Genome accession   NZ_CP035256
Coordinates   1273131..1273700 (-) Length   189 a.a.
NCBI ID   WP_073177105.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901930     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268131..1278700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH24_RS06430 (EQH24_06745) - 1268579..1268821 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EQH24_RS06435 (EQH24_06750) - 1268878..1269366 (-) 489 WP_001835775.1 hypothetical protein -
  EQH24_RS06440 (EQH24_06755) - 1269459..1270130 (-) 672 Protein_1293 Dyp-type peroxidase domain-containing protein -
  EQH24_RS06445 (EQH24_06760) - 1270100..1270766 (-) 667 Protein_1294 winged helix-turn-helix domain-containing protein -
  EQH24_RS06450 (EQH24_06765) gdhA 1271106..1272452 (+) 1347 WP_023396666.1 NADP-specific glutamate dehydrogenase -
  EQH24_RS06455 (EQH24_06775) - 1272948..1273118 (-) 171 WP_000711943.1 hypothetical protein -
  EQH24_RS06460 (EQH24_06780) comA 1273131..1273700 (-) 570 WP_073177105.1 ATP-binding cassette domain-containing protein Regulator
  EQH24_RS06465 (EQH24_06785) - 1273726..1273989 (-) 264 Protein_1298 transposase -
  EQH24_RS06470 (EQH24_06790) - 1273988..1274275 (+) 288 Protein_1299 transposase -
  EQH24_RS06475 (EQH24_06795) - 1274575..1274793 (-) 219 Protein_1300 hypothetical protein -
  EQH24_RS06480 (EQH24_06805) - 1275589..1275726 (-) 138 WP_000718654.1 hypothetical protein -
  EQH24_RS06485 (EQH24_06810) - 1275859..1277178 (-) 1320 WP_000945311.1 FtsX-like permease family protein -
  EQH24_RS06490 (EQH24_06815) - 1277181..1277921 (-) 741 WP_000356590.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21076.50 Da        Isoelectric Point: 8.4331

>NTDB_id=296965 EQH24_RS06460 WP_073177105.1 1273131..1273700(-) (comA) [Streptococcus pneumoniae strain TVO_1901930]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=296965 EQH24_RS06460 WP_073177105.1 1273131..1273700(-) (comA) [Streptococcus pneumoniae strain TVO_1901930]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.473

98.413

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

42.391

97.354

0.413
  comA Streptococcus mitis SK321

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus pneumoniae R6

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

41.398

98.413

0.407
  comA Streptococcus pneumoniae Rx1

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.323

98.413

0.397