Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SUB_RS06180 Genome accession   NC_012004
Coordinates   1221921..1222865 (-) Length   314 a.a.
NCBI ID   WP_012658711.1    Uniprot ID   B9DWH0
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216921..1227865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS06160 (SUB1232) - 1217202..1217909 (-) 708 WP_012658707.1 O-methyltransferase -
  SUB_RS06165 (SUB1233) - 1218049..1219278 (-) 1230 WP_012658708.1 L-lactate MFS transporter -
  SUB_RS06170 (SUB1234) - 1219403..1220044 (-) 642 WP_012658709.1 HAD family hydrolase -
  SUB_RS06175 (SUB1235) pepF 1220096..1221904 (-) 1809 WP_041817637.1 oligoendopeptidase F Regulator
  SUB_RS06180 (SUB1236) coiA 1221921..1222865 (-) 945 WP_012658711.1 competence protein CoiA Machinery gene
  SUB_RS06185 (SUB1237) - 1222941..1224086 (-) 1146 WP_012658712.1 MFS transporter -
  SUB_RS06190 (SUB1238) - 1224172..1224888 (-) 717 WP_041817639.1 pseudouridine synthase -
  SUB_RS06195 (SUB1239) nagB 1224954..1225658 (-) 705 WP_012658714.1 glucosamine-6-phosphate deaminase -
  SUB_RS06200 (SUB1240) queA 1225839..1226867 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 37543.95 Da        Isoelectric Point: 8.9233

>NTDB_id=29685 SUB_RS06180 WP_012658711.1 1221921..1222865(-) (coiA) [Streptococcus uberis 0140J]
MLTALDSEGKLCHLLGEFPLSKDYFCPGCGQSLCLKKGKVMRPHFAHKHLRDCHFFSENESVEHLQLKATLYKTISKTED
VRIEKVFPEFGQIADLCINDKLILEVQCSPLPIDRLIERTNAYHREGYMVYWLLGKKLWLRKRLNHLQKQFLAFSWFIGF
YLWELDLEKEELRLHYMIHQNLFGKLCYLTKRCSFKDNIMAFLRLPFQKSCASKMTLHMDQEVIGKIKKSLCRRDKSWLK
RQEDAYLQGKNLLTEPLETFYPQIRPPFSDIPFCQIHENLQSYYESFDHFYQKMKDKKVQTLYPPFLYVKIKEN

Nucleotide


Download         Length: 945 bp        

>NTDB_id=29685 SUB_RS06180 WP_012658711.1 1221921..1222865(-) (coiA) [Streptococcus uberis 0140J]
GTGTTAACAGCATTGGATTCTGAGGGGAAATTGTGCCATCTTTTAGGTGAGTTTCCTCTTTCAAAGGATTATTTTTGCCC
AGGGTGTGGGCAAAGTTTATGTCTAAAAAAGGGAAAAGTCATGCGTCCTCACTTTGCTCATAAGCATTTAAGGGATTGTC
ACTTCTTTTCTGAAAATGAATCGGTAGAGCATTTACAATTAAAAGCAACTTTATACAAGACCATCAGCAAAACAGAAGAC
GTCCGTATTGAAAAGGTTTTTCCTGAGTTTGGACAGATAGCTGATTTATGTATTAATGATAAGTTAATTTTAGAAGTTCA
ATGTAGCCCTTTACCCATCGACCGCTTAATTGAGAGAACAAACGCATACCATCGTGAAGGGTATATGGTTTATTGGCTTT
TAGGTAAAAAACTTTGGTTAAGAAAGAGATTAAATCACCTGCAAAAACAGTTTTTAGCCTTTTCTTGGTTTATCGGTTTT
TATCTTTGGGAACTAGATTTAGAAAAAGAAGAACTCCGACTACACTATATGATTCATCAAAATTTATTTGGAAAGCTGTG
CTATTTAACCAAAAGATGTTCCTTTAAGGACAATATTATGGCTTTTTTAAGACTCCCTTTTCAAAAAAGCTGTGCTTCAA
AAATGACTCTTCACATGGATCAAGAGGTGATAGGTAAAATCAAAAAATCTTTATGTCGTAGAGACAAATCTTGGCTTAAG
CGACAAGAAGATGCTTACCTTCAAGGTAAGAATTTATTAACAGAACCTCTAGAAACTTTTTATCCTCAAATTAGACCACC
CTTTTCCGACATTCCATTTTGTCAGATTCATGAAAATTTACAGTCATATTATGAATCTTTTGATCATTTTTATCAGAAAA
TGAAAGATAAAAAAGTGCAAACGCTTTATCCTCCATTCCTTTATGTTAAAATAAAAGAGAACTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DWH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.602

98.408

0.459
  coiA Streptococcus pneumoniae TIGR4

45.631

98.408

0.449
  coiA Streptococcus pneumoniae Rx1

45.631

98.408

0.449
  coiA Streptococcus pneumoniae D39

45.631

98.408

0.449
  coiA Streptococcus pneumoniae R6

45.631

98.408

0.449
  coiA Lactococcus lactis subsp. cremoris KW2

38.39

100

0.395

Multiple sequence alignment