Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EQH26_RS06185 Genome accession   NZ_CP035254
Coordinates   1228720..1229067 (-) Length   115 a.a.
NCBI ID   WP_001816799.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223720..1234067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS06155 (EQH26_06500) - 1223825..1224067 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EQH26_RS06160 (EQH26_06505) - 1224124..1224702 (-) 579 WP_000252105.1 hypothetical protein -
  EQH26_RS06165 (EQH26_06510) efeB 1224677..1225690 (-) 1014 Protein_1235 iron uptake transporter deferrochelatase/peroxidase subunit -
  EQH26_RS06170 (EQH26_06515) - 1225660..1226151 (-) 492 Protein_1236 winged helix-turn-helix domain-containing protein -
  EQH26_RS06175 (EQH26_06520) gdhA 1226685..1228031 (+) 1347 WP_000199537.1 NADP-specific glutamate dehydrogenase -
  EQH26_RS06180 (EQH26_06530) - 1228537..1228707 (-) 171 WP_000711943.1 hypothetical protein -
  EQH26_RS06185 comA/nlmT 1228720..1229067 (-) 348 WP_001816799.1 ATP-binding cassette domain-containing protein Regulator
  EQH26_RS11095 comA 1229124..1229288 (-) 165 WP_109701449.1 hypothetical protein Regulator
  EQH26_RS06190 (EQH26_06540) - 1229314..1230138 (-) 825 Protein_1241 IS5 family transposase -
  EQH26_RS06195 (EQH26_06555) - 1230394..1231129 (+) 736 Protein_1242 IS630 family transposase -
  EQH26_RS06200 (EQH26_06560) - 1231363..1231815 (-) 453 Protein_1243 hypothetical protein -
  EQH26_RS06205 (EQH26_06565) - 1231817..1232104 (-) 288 WP_000869754.1 hypothetical protein -
  EQH26_RS10990 - 1232699..1233097 (-) 399 Protein_1245 ATP-binding cassette domain-containing protein -
  EQH26_RS06220 (EQH26_06580) - 1233185..1233796 (-) 612 WP_000251931.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12824.95 Da        Isoelectric Point: 9.6926

>NTDB_id=296841 EQH26_RS06185 WP_001816799.1 1228720..1229067(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901932]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDA
DIIFVMKGGKIVESGNHKYLMELGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=296841 EQH26_RS06185 WP_001816799.1 1228720..1229067(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901932]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGAGCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

48.148

93.913

0.452
  comA Streptococcus mitis SK321

47.222

93.913

0.443
  comA Streptococcus mitis NCTC 12261

47.222

93.913

0.443
  comA Streptococcus pneumoniae D39

46.296

93.913

0.435
  comA Streptococcus pneumoniae TIGR4

46.296

93.913

0.435
  comA Streptococcus pneumoniae Rx1

46.296

93.913

0.435
  comA Streptococcus pneumoniae R6

46.296

93.913

0.435
  rcrQ Streptococcus mutans UA159

41.228

99.13

0.409
  rcrP Streptococcus mutans UA159

45.918

85.217

0.391