Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SUB_RS04265 Genome accession   NC_012004
Coordinates   825969..826649 (+) Length   226 a.a.
NCBI ID   WP_012658347.1    Uniprot ID   B9DS19
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820969..831649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS04240 (SUB0838) - 821065..821658 (+) 594 WP_012658342.1 histidine phosphatase family protein -
  SUB_RS04245 (SUB0839) - 821672..822283 (+) 612 WP_012658343.1 histidine phosphatase family protein -
  SUB_RS04250 (SUB0840) - 822362..823237 (+) 876 WP_231837440.1 transporter -
  SUB_RS04255 (SUB0841) - 823269..824699 (+) 1431 WP_012658345.1 6-phospho-beta-glucosidase -
  SUB_RS04260 (SUB0842) - 824801..825925 (+) 1125 WP_012658346.1 AI-2E family transporter -
  SUB_RS04265 (SUB0843) radC 825969..826649 (+) 681 WP_012658347.1 RadC family protein Machinery gene
  SUB_RS04270 (SUB0844) - 826646..827347 (-) 702 WP_012658348.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SUB_RS04275 (SUB0845) - 827365..828006 (-) 642 WP_012658349.1 redox-sensing transcriptional repressor Rex -
  SUB_RS04280 (SUB0847) - 828170..828388 (-) 219 WP_012658350.1 DUF4649 family protein -
  SUB_RS04285 (SUB0848) - 828418..828768 (-) 351 WP_012658351.1 DUF1831 domain-containing protein -
  SUB_RS04290 (SUB0849) - 828771..829901 (-) 1131 WP_012658352.1 cysteine desulfurase family protein -
  SUB_RS04295 (SUB0850) - 829891..830862 (-) 972 WP_012658353.1 ribose-phosphate diphosphokinase -
  SUB_RS04300 (SUB0851) - 830981..831553 (-) 573 WP_012658354.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25902.23 Da        Isoelectric Point: 9.1246

>NTDB_id=29672 SUB_RS04265 WP_012658347.1 825969..826649(+) (radC) [Streptococcus uberis 0140J]
MYAVKLNKDTLLPREKLVQYGVEQLSHQELLAILLRTGNKEKHVMELASHILHCLESLADFDKLSLQELQQLPGIGKVKA
IELKAMVELCHRIQKAKSSHSIQILSSYQVAKRMMHELGDKKQEHLIAIYLDTQNRIIEEKTIFIGSVRRSIAEPREILH
FACRNMATSLIVVHNHPSGLTNPSENDVAFTKKIKRSCDHLGINCLDHIIVGKKQYYSFREKSDIF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=29672 SUB_RS04265 WP_012658347.1 825969..826649(+) (radC) [Streptococcus uberis 0140J]
ATGTATGCTGTTAAACTAAATAAAGACACACTTTTACCAAGAGAAAAACTTGTTCAATATGGTGTTGAACAACTCAGTCA
CCAAGAATTATTAGCCATCTTACTGCGGACTGGAAATAAAGAAAAACATGTTATGGAGTTAGCTTCGCATATTTTACATT
GTTTGGAGAGTCTAGCAGATTTCGATAAATTATCTCTACAAGAATTACAACAATTACCAGGGATTGGAAAAGTAAAAGCG
ATAGAATTGAAAGCAATGGTAGAACTATGCCATCGTATCCAAAAAGCAAAATCTTCCCACTCTATTCAGATTTTATCAAG
TTACCAAGTGGCTAAACGAATGATGCACGAGTTAGGCGATAAAAAACAAGAACATCTAATTGCTATCTATCTGGACACAC
AAAATCGTATCATAGAGGAAAAAACTATTTTTATAGGTAGTGTCAGACGTTCCATTGCAGAACCAAGGGAAATCTTACAT
TTCGCCTGCCGCAATATGGCAACTAGTTTGATTGTTGTTCATAATCATCCGTCTGGTTTGACCAATCCCAGCGAAAATGA
TGTTGCATTTACTAAAAAAATAAAACGATCATGTGATCACTTGGGCATAAACTGCCTAGATCACATCATCGTTGGAAAAA
AACAATATTATAGTTTTCGGGAAAAATCTGACATTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DS19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.735

100

0.597
  radC Streptococcus pneumoniae R6

59.292

100

0.593
  radC Streptococcus pneumoniae D39

59.292

100

0.593
  radC Streptococcus gordonii str. Challis substr. CH1

56.195

100

0.562
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

41.232

93.363

0.385
  radC Haemophilus influenzae Rd KW20

38.532

96.46

0.372

Multiple sequence alignment