Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EQH28_RS05925 Genome accession   NZ_CP035252
Coordinates   1189323..1189892 (-) Length   189 a.a.
NCBI ID   WP_075270868.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184323..1194892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS05895 (EQH28_06235) - 1184446..1184688 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EQH28_RS05900 (EQH28_06240) - 1184745..1185323 (-) 579 WP_000252103.1 hypothetical protein -
  EQH28_RS05905 (EQH28_06245) - 1185298..1186311 (-) 1014 Protein_1176 Dyp-type peroxidase -
  EQH28_RS05910 (EQH28_06250) - 1186281..1186947 (-) 667 Protein_1177 winged helix-turn-helix domain-containing protein -
  EQH28_RS05915 (EQH28_06255) gdhA 1187288..1188634 (+) 1347 WP_000199566.1 NADP-specific glutamate dehydrogenase -
  EQH28_RS05920 (EQH28_06265) - 1189140..1189310 (-) 171 WP_000711943.1 hypothetical protein -
  EQH28_RS05925 (EQH28_06270) comA/nlmT 1189323..1189892 (-) 570 WP_075270868.1 ATP-binding cassette domain-containing protein Regulator
  EQH28_RS05935 (EQH28_06290) - 1191171..1191867 (+) 697 Protein_1182 IS630 family transposase -
  EQH28_RS05940 (EQH28_06295) - 1191912..1192361 (-) 450 WP_000424224.1 YhcH/YjgK/YiaL family protein -
  EQH28_RS05945 (EQH28_06305) - 1192866..1193321 (-) 456 WP_001000318.1 HIT family protein -
  EQH28_RS05950 (EQH28_06310) - 1193343..1194803 (-) 1461 WP_000272434.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21257.69 Da        Isoelectric Point: 8.9014

>NTDB_id=296715 EQH28_RS05925 WP_075270868.1 1189323..1189892(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901934]
MPSRLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSIFDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=296715 EQH28_RS05925 WP_075270868.1 1189323..1189892(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901934]
ATACCATCAAGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTTTTGATAACATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus mitis NCTC 12261

41.398

98.413

0.407
  comA Streptococcus gordonii str. Challis substr. CH1

40.957

99.471

0.407
  comA Streptococcus mitis SK321

40.86

98.413

0.402
  comA Streptococcus pneumoniae D39

40.323

98.413

0.397
  comA Streptococcus pneumoniae Rx1

40.323

98.413

0.397
  comA Streptococcus pneumoniae R6

40.323

98.413

0.397
  comA Streptococcus pneumoniae TIGR4

39.247

98.413

0.386
  rcrQ Streptococcus mutans UA159

36.508

100

0.365