Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NMCC_RS04450 Genome accession   NC_010120
Coordinates   853475..854083 (+) Length   202 a.a.
NCBI ID   WP_025462077.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 848475..859083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS04435 (NMCC_0846) - 850312..850899 (-) 588 WP_012221519.1 superoxide dismutase -
  NMCC_RS04440 (NMCC_0847) dnaB 851062..852468 (+) 1407 WP_017629268.1 replicative DNA helicase -
  NMCC_RS04445 (NMCC_0848) pilH 852777..853445 (+) 669 WP_017629269.1 GspH/FimT family pseudopilin Machinery gene
  NMCC_RS04450 (NMCC_0849) pilV 853475..854083 (+) 609 WP_025462077.1 type IV pilus modification protein PilV Machinery gene
  NMCC_RS04455 (NMCC_0850) pilJ 854080..855078 (+) 999 WP_012221523.1 PilW family protein Machinery gene
  NMCC_RS04460 (NMCC_0851) pilK 855057..855650 (+) 594 WP_012221524.1 pilus assembly PilX family protein Machinery gene
  NMCC_RS04465 (NMCC_0852) pilX 855655..856128 (+) 474 WP_012221525.1 PilX family type IV pilin Machinery gene
  NMCC_RS04475 (NMCC_0854) dut 857675..858127 (+) 453 WP_010951049.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21902.81 Da        Isoelectric Point: 4.7979

>NTDB_id=29649 NMCC_RS04450 WP_025462077.1 853475..854083(+) (pilV) [Neisseria meningitidis 053442]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNNTLSAVDGEFAIDAIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLSGNAFSSNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=29649 NMCC_RS04450 WP_025462077.1 853475..854083(+) (pilV) [Neisseria meningitidis 053442]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACAATACACTATCAGCTGTGGATGGTGAGTTTGCGATTGATGCCATAAAAACTAAGACGCA
GTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCATTACGCCG
TCTGCAAAGATTCGTCGGGTAACGCGCCGACATTGTCCGGCAATGCTTTTTCTTCAAATTGCGACAATAAGGCAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

95.631

100

0.975
  pilI Neisseria gonorrhoeae MS11

85.149

100

0.851
  pilV Neisseria gonorrhoeae MS11

85.149

100

0.851

Multiple sequence alignment