Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMCC_RS04455 Genome accession   NC_010120
Coordinates   854080..855078 (+) Length   332 a.a.
NCBI ID   WP_012221523.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849080..860078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS04435 (NMCC_0846) - 850312..850899 (-) 588 WP_012221519.1 superoxide dismutase -
  NMCC_RS04440 (NMCC_0847) dnaB 851062..852468 (+) 1407 WP_017629268.1 replicative DNA helicase -
  NMCC_RS04445 (NMCC_0848) pilH 852777..853445 (+) 669 WP_017629269.1 GspH/FimT family pseudopilin Machinery gene
  NMCC_RS04450 (NMCC_0849) pilV 853475..854083 (+) 609 WP_025462077.1 type IV pilus modification protein PilV Machinery gene
  NMCC_RS04455 (NMCC_0850) pilJ 854080..855078 (+) 999 WP_012221523.1 PilW family protein Machinery gene
  NMCC_RS04460 (NMCC_0851) pilK 855057..855650 (+) 594 WP_012221524.1 pilus assembly PilX family protein Machinery gene
  NMCC_RS04465 (NMCC_0852) pilX 855655..856128 (+) 474 WP_012221525.1 PilX family type IV pilin Machinery gene
  NMCC_RS04475 (NMCC_0854) dut 857675..858127 (+) 453 WP_010951049.1 dUTP diphosphatase -
  NMCC_RS04480 (NMCC_0855) dapC 858206..859393 (+) 1188 WP_012221527.1 succinyldiaminopimelate transaminase -
  NMCC_RS15325 - 859481..859606 (+) 126 Protein_826 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36325.15 Da        Isoelectric Point: 8.4290

>NTDB_id=29650 NMCC_RS04455 WP_012221523.1 854080..855078(+) (pilJ) [Neisseria meningitidis 053442]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHTKNDIIVDPSKQTQPVPAKPGAKQENPLFSLEWANTNNTNNNTAKLIPIAESTDIKYPGFAQARPALIFQYGI
DDLDASAETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWG
NPQLLAKKIRDMKVRYIYVSDCPEDDDAGKEETFKYTDTFNSAKDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYHIDAT
IRGGNVCANRTL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=29650 NMCC_RS04455 WP_012221523.1 854080..855078(+) (pilJ) [Neisseria meningitidis 053442]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCACAACAGGATTTACGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAAACGATATTATTGTTGATCCAAGTAAGCAAACTCAACCTGTCCCTGCAAAACC
CGGTGCCAAACAAGAAAATCCCCTTTTTTCTTTAGAGTGGGCTAATACTAATAATACTAATAATAATACAGCTAAATTGA
TTCCTATTGCTGAATCCACAGATATTAAATATCCGGGTTTTGCCCAGGCTCGTCCGGCATTGATTTTCCAATACGGAATC
GATGATCTTGATGCGAGTGCTGAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTAC
CTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGCATGTGG
TCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGT
AATCCTCAGTTGCTCGCGAAAAAGATTAGAGATATGAAAGTGCGGTATATCTATGTTTCCGACTGTCCTGAAGATGACGA
TGCCGGCAAAGAGGAAACATTCAAATATACGGATACATTCAACAGCGCCAAAGATGCTGTTACGCCCGCCGGGGTGGAGG
TTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCATATCGATGCGACA
ATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

73.574

100

0.738

Multiple sequence alignment