Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMCC_RS04460 Genome accession   NC_010120
Coordinates   855057..855650 (+) Length   197 a.a.
NCBI ID   WP_012221524.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 850057..860650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS04435 (NMCC_0846) - 850312..850899 (-) 588 WP_012221519.1 superoxide dismutase -
  NMCC_RS04440 (NMCC_0847) dnaB 851062..852468 (+) 1407 WP_017629268.1 replicative DNA helicase -
  NMCC_RS04445 (NMCC_0848) pilH 852777..853445 (+) 669 WP_017629269.1 GspH/FimT family pseudopilin Machinery gene
  NMCC_RS04450 (NMCC_0849) pilV 853475..854083 (+) 609 WP_025462077.1 type IV pilus modification protein PilV Machinery gene
  NMCC_RS04455 (NMCC_0850) pilJ 854080..855078 (+) 999 WP_012221523.1 PilW family protein Machinery gene
  NMCC_RS04460 (NMCC_0851) pilK 855057..855650 (+) 594 WP_012221524.1 pilus assembly PilX family protein Machinery gene
  NMCC_RS04465 (NMCC_0852) pilX 855655..856128 (+) 474 WP_012221525.1 PilX family type IV pilin Machinery gene
  NMCC_RS04475 (NMCC_0854) dut 857675..858127 (+) 453 WP_010951049.1 dUTP diphosphatase -
  NMCC_RS04480 (NMCC_0855) dapC 858206..859393 (+) 1188 WP_012221527.1 succinyldiaminopimelate transaminase -
  NMCC_RS15325 - 859481..859606 (+) 126 Protein_826 IS5/IS1182 family transposase -
  NMCC_RS04485 (NMCC_0856) yaaA 859655..860434 (+) 780 WP_012221528.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21630.44 Da        Isoelectric Point: 5.3764

>NTDB_id=29651 NMCC_RS04460 WP_012221524.1 855057..855650(+) (pilK) [Neisseria meningitidis 053442]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCAAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTANSTNLCIDNKGTEYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=29651 NMCC_RS04460 WP_012221524.1 855057..855650(+) (pilK) [Neisseria meningitidis 053442]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTGCCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGGAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888

Multiple sequence alignment