Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQH32_RS06145 Genome accession   NZ_CP035248
Coordinates   1209149..1209718 (-) Length   189 a.a.
NCBI ID   WP_409202196.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901939     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204149..1214718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH32_RS06115 (EQH32_06395) - 1204494..1205429 (+) 936 WP_000401798.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  EQH32_RS06120 (EQH32_06400) - 1205525..1205767 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EQH32_RS06125 (EQH32_06405) - 1205824..1206042 (-) 219 WP_001818873.1 hypothetical protein -
  EQH32_RS06130 (EQH32_06410) - 1206039..1206773 (-) 735 Protein_1226 transposase -
  EQH32_RS06135 (EQH32_06415) gdhA 1207114..1208460 (+) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  EQH32_RS06140 (EQH32_06425) - 1208966..1209136 (-) 171 WP_000711939.1 hypothetical protein -
  EQH32_RS06145 (EQH32_06430) comA 1209149..1209718 (-) 570 WP_409202196.1 ATP-binding cassette domain-containing protein Regulator
  EQH32_RS06150 (EQH32_06435) - 1209744..1210549 (-) 806 Protein_1230 IS5 family transposase -
  EQH32_RS10975 (EQH32_06450) - 1210805..1211851 (+) 1047 Protein_1231 IS630 family transposase -
  EQH32_RS06160 (EQH32_06455) - 1211963..1212412 (-) 450 WP_000424223.1 YhcH/YjgK/YiaL family protein -
  EQH32_RS06165 (EQH32_06460) cdd 1212425..1212830 (-) 406 Protein_1233 cytidine deaminase -
  EQH32_RS06175 (EQH32_06465) - 1212917..1213372 (-) 456 WP_001000318.1 HIT family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21126.54 Da        Isoelectric Point: 8.4246

>NTDB_id=296355 EQH32_RS06145 WP_409202196.1 1209149..1209718(-) (comA) [Streptococcus pneumoniae strain TVO_1901939]
MPSGLYKIDTGKVLFYGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQQIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIFVM
KGGKIVESGNHKYLITLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=296355 EQH32_RS06145 WP_409202196.1 1209149..1209718(-) (comA) [Streptococcus pneumoniae strain TVO_1901939]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTTATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACAGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATAACTCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

42.391

97.354

0.413
  comA Streptococcus mitis NCTC 12261

41.935

98.413

0.413
  comA Streptococcus mitis SK321

41.398

98.413

0.407
  comA Streptococcus pneumoniae R6

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.86

98.413

0.402
  comA Streptococcus pneumoniae D39

40.86

98.413

0.402
  comA/nlmT Streptococcus mutans UA159

41.304

97.354

0.402
  comA Streptococcus pneumoniae TIGR4

39.785

98.413

0.392