Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C9I47_RS16735 Genome accession   NZ_CP029843
Coordinates   3879590..3881095 (+) Length   501 a.a.
NCBI ID   WP_111267767.1    Uniprot ID   -
Organism   Marilutibacter maris strain HZ9B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3874590..3886095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS16710 (C9I47_3088) speA 3874722..3876635 (-) 1914 WP_111268213.1 arginine decarboxylase -
  C9I47_RS16715 (C9I47_3089) speE 3876888..3877739 (+) 852 WP_111267763.1 polyamine aminopropyltransferase -
  C9I47_RS16720 (C9I47_3090) - 3877980..3878660 (+) 681 WP_111267764.1 phosphotransferase -
  C9I47_RS16725 (C9I47_3091) - 3878657..3878995 (-) 339 WP_111267765.1 P-II family nitrogen regulator -
  C9I47_RS16730 (C9I47_3092) - 3879285..3879560 (+) 276 WP_111267766.1 ubiquinone biosynthesis accessory factor UbiK -
  C9I47_RS16735 (C9I47_3093) comM 3879590..3881095 (+) 1506 WP_111267767.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C9I47_RS16740 - 3881239..3881760 (-) 522 WP_111267768.1 hypothetical protein -
  C9I47_RS16745 - 3881841..3882320 (-) 480 WP_111267769.1 hypothetical protein -
  C9I47_RS16750 - 3882407..3882871 (-) 465 WP_111267770.1 hypothetical protein -
  C9I47_RS16755 (C9I47_3094) - 3883000..3884184 (-) 1185 WP_111267771.1 putative peptide maturation dehydrogenase -
  C9I47_RS16760 (C9I47_3095) - 3884356..3884706 (+) 351 WP_111267772.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52968.83 Da        Isoelectric Point: 9.2298

>NTDB_id=296287 C9I47_RS16735 WP_111267767.1 3879590..3881095(+) (comM) [Marilutibacter maris strain HZ9B]
MNLALVHGRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVRESKDRVRAAIQCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPLEPLNDYEFLGELGLTGELRAVDGVLPAALAAAEAGRRLLVPAGNGAEVALSSRVEAYTARTL
LEVCALLQGRKSLPAAIAVPTRRRPGPDLCEVRGQAQARRALEVAAAGGHHLLLVGPPGCGKTLLASRLPGLLPQASEDE
ALEAAAIASVSGRGLDPAHWRQRRFRAPHHTASAVALIGGGAEPRPGEVSLAHEGVLFLDELPEWSRQALEVLREPLESG
VVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDTSGRCRCSPDAIRRYRGRISGPLMDRIDLHVHVPRLPPSQLRPDGPP
GESSAAVQARVAVARTRQLERSGTPNARLGEAQMRACCRLDNGDQALLERAAESLRLSARSMHRILRVARTIADLAGSAD
IATAHLTEAIGYRRMGSADGL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=296287 C9I47_RS16735 WP_111267767.1 3879590..3881095(+) (comM) [Marilutibacter maris strain HZ9B]
ATGAACCTGGCCCTCGTGCACGGACGTGCGCGGTCCGGGGTCCGGGCACCGGCGGTACGGGTGGAAGTGCACCTGGCCGG
CGGCCTGCCCGCGATGTCGATCGTCGGCCTGCCCGAGGCCGCGGTCCGCGAATCCAAGGACCGGGTGCGCGCCGCGATCC
AGTGCGCGCAGTTCGAGTTCCCGGCGCGCCGGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGATCTGCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGCCAGATCCCGCTGGAACCGCTGAACGACTACGAGTTCCT
CGGCGAACTCGGCCTGACCGGCGAGCTGCGCGCGGTCGACGGCGTGCTGCCGGCGGCGCTGGCGGCCGCCGAAGCCGGAC
GCCGCCTGCTGGTGCCGGCCGGCAACGGCGCCGAAGTCGCCCTGTCGAGCCGGGTCGAGGCGTATACCGCACGCACCCTG
CTGGAGGTCTGCGCGCTGCTGCAGGGACGCAAGTCGCTGCCGGCGGCGATCGCGGTCCCGACGCGGCGCCGGCCGGGCCC
TGACCTCTGCGAGGTGCGCGGCCAGGCCCAGGCCCGCCGTGCGCTGGAAGTCGCCGCGGCGGGCGGCCACCACCTGCTGC
TGGTCGGCCCGCCGGGTTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGCAGGCGTCCGAGGACGAG
GCCCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGTCGCGGCCTCGATCCCGCGCACTGGCGGCAACGCCGGTTCCGCGC
CCCCCACCACACCGCCAGCGCGGTCGCGCTGATCGGCGGCGGCGCCGAACCGCGACCGGGCGAGGTCTCGCTCGCCCACG
AAGGGGTGTTGTTCCTCGACGAACTGCCGGAGTGGAGCCGGCAGGCGCTGGAAGTCCTGCGCGAACCGCTGGAGTCGGGC
GTGGTCACCGTATCGCGGGCCGCCCGCAGCGCCGAGTTCCCGGCCCGCTTCCAACTGGTCGCGGCGATGAACCCGTGTCC
CTGCGGCTGGGCCGGCGACACCAGCGGCCGCTGCCGCTGCAGCCCCGACGCCATCCGTCGCTATCGCGGACGGATTTCCG
GTCCGTTGATGGACCGGATCGACCTGCACGTGCACGTGCCGCGGCTGCCGCCTTCGCAGTTGCGCCCCGATGGGCCGCCC
GGAGAGTCCAGCGCCGCGGTCCAGGCGCGGGTGGCCGTCGCCCGCACGCGCCAGCTCGAACGCAGCGGCACGCCCAACGC
GCGCCTCGGCGAGGCCCAGATGCGCGCGTGCTGCCGGCTCGACAACGGCGACCAGGCCCTGCTCGAACGCGCCGCCGAGT
CGCTGCGTCTGAGTGCGCGCTCGATGCACCGGATCCTGCGGGTGGCGCGCACCATCGCCGACCTGGCCGGCAGCGCCGAC
ATCGCCACCGCTCATCTGACCGAGGCGATCGGCTACCGGCGGATGGGCAGCGCGGACGGGCTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.93

99.202

0.545
  comM Vibrio campbellii strain DS40M4

54.418

99.401

0.541
  comM Haemophilus influenzae Rd KW20

52.495

100

0.525
  comM Glaesserella parasuis strain SC1401

52.096

100

0.521
  comM Legionella pneumophila str. Paris

49.704

100

0.503
  comM Legionella pneumophila strain ERS1305867

49.704

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.449

Multiple sequence alignment