Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DM558_RS15340 Genome accession   NZ_CP029822
Coordinates   3291591..3293087 (+) Length   498 a.a.
NCBI ID   WP_127164731.1    Uniprot ID   A0A3Q9JLH8
Organism   Entomomonas moraniae strain QZS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3286591..3298087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM558_RS15320 (DM558_15430) yegQ 3286614..3288002 (+) 1389 WP_127164728.1 tRNA 5-hydroxyuridine modification protein YegQ -
  DM558_RS15325 (DM558_15435) - 3288044..3289798 (+) 1755 WP_127164729.1 carbamoyltransferase -
  DM558_RS15330 (DM558_15440) - 3289836..3290963 (-) 1128 WP_127164730.1 hypothetical protein -
  DM558_RS15335 (DM558_15445) - 3291081..3291521 (+) 441 WP_109703652.1 DUF488 family protein -
  DM558_RS15340 (DM558_15450) comM 3291591..3293087 (+) 1497 WP_127164731.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DM558_RS15345 (DM558_15455) - 3293369..3295354 (+) 1986 WP_127164732.1 choline BCCT transporter BetT -
  DM558_RS15350 (DM558_15460) - 3295420..3295644 (-) 225 WP_109703638.1 DNA-binding protein -
  DM558_RS15355 (DM558_15465) - 3295938..3296348 (+) 411 WP_127164733.1 helix-turn-helix domain-containing protein -
  DM558_RS15360 (DM558_15470) glyQ 3296527..3297474 (+) 948 WP_127164734.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54188.47 Da        Isoelectric Point: 8.2011

>NTDB_id=296217 DM558_RS15340 WP_127164731.1 3291591..3293087(+) (comM) [Entomomonas moraniae strain QZS01]
MTLAITYSRALLGVEAPCVTVESHLSNGLPSLTLVGLPETAVRESKDRVRSAIINSQFEFPPRRITLNLAPADLPKEGGR
FDLSIALGILASSGQIPVEPLKNIECLGELALSGHIRPVKGVLSAALAARKEGRALWVARENAEEASLATGLTVYAVGHL
FEVAAHFSGQKPLTPFESKGLLRTVEPYPDLVDVQGQMAAKRALLIAACGAHNLLFSGPPGTGKTLLASRLPGILPELTE
QEALEVAAIYSVTGSEPLSHWPQRPFRSPHHTSSAAAMVGGGSKPQPGEVTLAHQGVLFLDEFTEFDRRVLEVLREPLEN
HEIVVARAKEKSLFPAKFQLVAAMNPCPCGYLGDLTRSCRCTPEQVKRYQNKLSGPLLDRIDLHVHVARETLSLSITQNK
QQLTTAEAAKQVATVRALQHKRQGCPNAYLTTKQLQSICLLSKDDQQWFEQAGEKLGLSLRALHRCLKVARTIADMQDEA
HISRAHLAEVLHYRPLSL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=296217 DM558_RS15340 WP_127164731.1 3291591..3293087(+) (comM) [Entomomonas moraniae strain QZS01]
ATGACACTTGCTATTACCTATAGTCGTGCATTATTGGGTGTTGAGGCGCCTTGTGTTACTGTTGAAAGCCATCTTTCTAA
TGGGTTGCCTTCTCTCACTTTGGTAGGCTTGCCAGAAACAGCAGTTCGAGAATCTAAAGATCGCGTGAGAAGTGCCATTA
TTAATTCTCAGTTTGAGTTTCCTCCACGCCGTATTACTCTTAATTTGGCCCCTGCTGATTTACCCAAAGAAGGGGGACGA
TTCGATTTGTCCATTGCTTTAGGTATTTTGGCTTCCAGTGGTCAAATCCCAGTAGAACCTTTGAAAAATATTGAGTGTCT
AGGTGAGTTAGCTTTATCGGGGCATATTCGCCCCGTGAAAGGCGTATTGTCCGCCGCTTTAGCAGCGAGAAAAGAGGGGC
GTGCGTTGTGGGTTGCCCGTGAGAATGCTGAAGAAGCTAGCTTAGCGACAGGCTTAACGGTATATGCTGTTGGGCATTTA
TTCGAGGTAGCTGCTCATTTTTCAGGCCAAAAGCCGTTAACGCCTTTTGAGTCAAAGGGATTATTAAGAACGGTTGAGCC
ATACCCTGATTTGGTTGACGTTCAAGGTCAAATGGCGGCCAAGCGGGCTTTATTAATTGCAGCCTGTGGAGCTCATAACT
TATTATTCAGTGGCCCGCCTGGAACAGGTAAAACTTTATTAGCGAGTCGTTTGCCTGGTATTTTACCTGAGTTAACGGAG
CAAGAAGCATTGGAAGTGGCAGCTATTTATTCAGTTACGGGGTCAGAGCCTCTGTCTCATTGGCCTCAAAGGCCATTTAG
GTCACCACATCACACTTCATCTGCTGCCGCTATGGTAGGAGGGGGAAGTAAACCTCAACCCGGTGAGGTGACCTTGGCGC
ACCAAGGCGTGTTATTTTTGGACGAATTTACGGAGTTTGATCGACGAGTACTTGAGGTACTTCGAGAACCTTTAGAGAAT
CATGAAATAGTGGTTGCACGCGCTAAAGAAAAATCATTATTTCCTGCTAAGTTTCAACTTGTAGCCGCAATGAACCCTTG
TCCTTGTGGCTATTTAGGTGATTTAACCCGTAGTTGCCGTTGTACACCTGAACAGGTGAAACGTTATCAAAATAAATTGT
CAGGGCCATTACTCGATAGAATTGACTTGCATGTTCACGTGGCTAGGGAGACGTTATCGCTATCAATAACACAAAATAAA
CAGCAGTTAACAACGGCTGAGGCAGCAAAACAAGTCGCTACTGTTAGGGCTTTACAGCATAAGCGGCAAGGGTGTCCTAA
TGCTTATTTGACAACCAAACAGTTGCAATCTATTTGTTTGTTGTCAAAAGACGATCAGCAATGGTTTGAGCAAGCTGGCG
AAAAGCTGGGGTTGTCGTTACGGGCATTACATCGTTGTTTAAAAGTTGCTAGAACTATTGCTGATATGCAAGATGAGGCA
CACATTAGTCGAGCTCATTTAGCAGAGGTTTTACATTATAGACCATTATCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9JLH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.016

100

0.54
  comM Glaesserella parasuis strain SC1401

53.175

100

0.538
  comM Haemophilus influenzae Rd KW20

52.976

100

0.536
  comM Vibrio campbellii strain DS40M4

53.307

100

0.534
  comM Legionella pneumophila str. Paris

50.301

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.301

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.454

Multiple sequence alignment