Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DM292_RS16205 Genome accession   NZ_CP029772
Coordinates   3447152..3448648 (+) Length   498 a.a.
NCBI ID   WP_110778229.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain R2A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3442152..3453648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM292_RS16175 (DM292_16175) sutA 3442459..3442785 (-) 327 WP_110778225.1 transcriptional regulator SutA -
  DM292_RS16180 (DM292_16180) - 3442864..3443289 (-) 426 WP_110778226.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DM292_RS16185 (DM292_16185) - 3443392..3444642 (-) 1251 WP_110778227.1 ammonium transporter -
  DM292_RS16190 (DM292_16190) - 3444765..3446081 (-) 1317 WP_110778228.1 ammonium transporter -
  DM292_RS16195 (DM292_16195) glnK 3446120..3446458 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  DM292_RS16200 (DM292_16200) - 3446855..3447115 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  DM292_RS16205 (DM292_16205) comM 3447152..3448648 (+) 1497 WP_110778229.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DM292_RS16210 (DM292_16210) - 3448780..3450756 (+) 1977 WP_110778230.1 choline BCCT transporter BetT -
  DM292_RS16215 (DM292_16215) - 3450787..3452424 (-) 1638 WP_110778231.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53294.15 Da        Isoelectric Point: 8.1454

>NTDB_id=295995 DM292_RS16205 WP_110778229.1 3447152..3448648(+) (comM) [Stutzerimonas frequens strain R2A2]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPTRRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQRQLARQGCANAFLDLAGLRQHCQLTTEDQAWLERACERLALSLRAAHRLLKVARTLADMEQAER
ISRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=295995 DM292_RS16205 WP_110778229.1 3447152..3448648(+) (comM) [Stutzerimonas frequens strain R2A2]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCATCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCACCCGACGCATCACCCTCAATCTCGCCCCTGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCGAACGAGCGGCTGGACAAACTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCCGCCGCCCTCGCTGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTCACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTCGCCCAGGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCGGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGCCCTCTGGAGCATTGGCCGCAACGACCGTTCCG
CCAGCCTCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAAGTACTCGAGGTGCTGCGCGAGCCGCTGGAATCC
GGCCACATCGTCATCGCCCGGGCCCGCGACAAGGTGCGCTTTCCGGCGCGTTTTCAGCTCGTCGCGGCGATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAGCAGATTCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCAGTACTGGCCGCGCAGGTCGCCCAGGCACGGCAGCGGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCCAGCACTGCCAGCTGACCACCGAGGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATATGGAACAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCCCTGCAGTACCGGCCCGGCAGTCAAGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Glaesserella parasuis strain SC1401

55.179

100

0.556
  comM Haemophilus influenzae Rd KW20

54.691

100

0.55
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.468

Multiple sequence alignment