Detailed information NTG0295993

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: DM292_RS15930
• Genome accession: NZ_CP029772
• Coordinates: 3390942..3392006 (-)
• Length: 354 a.a.
• NCBI ID: WP_110778198.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain R2A2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3385942..3397006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DM292_RS15905 (DM292_15905)	aroK	3386520..3387065 (-)	546	WP_063539617.1	shikimate kinase AroK	-
DM292_RS15910 (DM292_15910)	pilQ	3387071..3389173 (-)	2103	WP_110778196.1	type IV pilus secretin PilQ	Machinery gene
DM292_RS15915 (DM292_15915)	pilP	3389227..3389753 (-)	527	Protein_3132	type 4a pilus biogenesis lipoprotein PilP	-
DM292_RS15920 (DM292_15920)	pilO	3389750..3390373 (-)	624	WP_110778197.1	type 4a pilus biogenesis protein PilO	-
DM292_RS15925 (DM292_15925)	-	3390370..3390942 (-)	573	WP_063539613.1	PilN domain-containing protein	-
DM292_RS15930 (DM292_15930)	comM	3390942..3392006 (-)	1065	WP_110778198.1	pilus assembly protein PilM	Machinery gene
DM292_RS15935 (DM292_15935)	-	3392188..3394608 (+)	2421	WP_110778199.1	penicillin-binding protein 1A	-
DM292_RS15940 (DM292_15940)	-	3394676..3395944 (-)	1269	WP_102839582.1	malic enzyme-like NAD(P)-binding protein	-
DM292_RS15945 (DM292_15945)	-	3396088..3396882 (-)	795	WP_110778200.1	thermonuclease family protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37768.18 Da
• Isoelectric Point: 4.6346

>NTDB_id=295993 DM292_RS15930 WP_110778198.1 3390942..3392006(-) (comM) [Stutzerimonas frequens strain R2A2]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKTIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYDLLAPQLGSAHGELTVAVVDIGATMTTLSVLHNGRTIYSREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=295993 DM292_RS15930 WP_110778198.1 3390942..3392006(-) (comM) [Stutzerimonas frequens strain R2A2]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTTCTCGAATT
AAGTCGATCGGGGAACCGCTACCGGGTTGAGGCTTATGCGGTTGAGCCGCTCCCACCAAATGCCGTGGTCGAAAAGAACA
TCGCTGAACTGGAAGGCGTTGGCCAGGCTCTGCAACGTGTGGTCGCAAAGGCTAAGACCGGCTGCAAGTCAGCCGTGGTA
GCTGTCTCCGGCTCAGCGGTGATTACCAAGACGATCGAGATGGACGCTGGGCTGTCTGACGAGGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGACCAATATATTCCCTATCCGTTGGAAGAGGTGGCGATCGACTTCGAGGTCCAGGGCCCCGCGCCGC
GTGCGCCCGGTCGGGTCGAGGTTCTGCTCGCTGCCTGTCGCAAGGAAAACGTCGAAGTGCGCGAGGCGGCACTGGCCCTG
GCCGGGCTCACTGCGAAGGTCGTTGATGTCGAGGCCTATGCGCTCGAGCGCTCCTATGACCTTCTGGCGCCGCAGTTAGG
GAGCGCGCATGGTGAGCTGACCGTCGCCGTCGTGGATATCGGCGCAACGATGACGACGCTGAGCGTCCTGCATAACGGAC
GCACCATATACAGTCGTGAGCAATTGTTCGGGGGGCGGCAACTGACGGAGGAAATCCAACGCCGTTATGGGCTGTCACAA
GAGGAGGCTGGCCTCGCTAAAAAGCAGGGAGGGCTTCCTGATGACTACGACAGTGAGGTTTTGCTTCCGTTCAAAGAAGC
GGTCGTTCAGCAGGTCTCACGCTCGCTGCAGTTCTTCTTCGCTGCTGGGCAGTTTCATGATGTCGATTGCATTCTGCTTG
CTGGTGGAACGGCTTCCATCCCGGGTCTTGATCATCTCATTCAGCAGAAGATCGGCACCCAGACTCTAGTTGCCAATCCG
TTTGCCGATATGGCTTTGAGTAGCAAGGTCAACGCAGGCGCGCTGGCCAGTGATGCGCCCTCGCTGATGATTGCGTGTGG
GTTGGCGCTAAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.497	100	0.565
pilM	Acinetobacter baumannii D1279779	56.497	100	0.565
comM	Acinetobacter baylyi ADP1	53.672	100	0.537
pilM	Legionella pneumophila strain ERS1305867	46.893	100	0.469