Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AWB57_RS12865 Genome accession   NZ_CP029760
Coordinates   1018821..1018970 (-) Length   49 a.a.
NCBI ID   WP_127919999.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0133     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013821..1023970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB57_RS05085 (AWB57_05075) - 1013848..1015215 (-) 1368 WP_064969533.1 radical SAM/SPASM domain-containing protein -
  AWB57_RS05090 (AWB57_05080) - 1015262..1015453 (-) 192 WP_064969532.1 hypothetical protein -
  AWB57_RS05095 (AWB57_05085) - 1015535..1017928 (-) 2394 WP_127919862.1 outer membrane beta-barrel family protein -
  AWB57_RS05100 (AWB57_05090) - 1018082..1018765 (-) 684 Protein_1004 TraM recognition domain-containing protein -
  AWB57_RS12865 (AWB57_05095) comA/nlmT 1018821..1018970 (-) 150 WP_127919999.1 cysteine peptidase family C39 domain-containing protein Regulator
  AWB57_RS05110 (AWB57_05100) - 1018999..1020300 (-) 1302 WP_064969528.1 radical SAM/SPASM domain-containing protein -
  AWB57_RS05115 (AWB57_05105) - 1020394..1020603 (-) 210 WP_064969527.1 hypothetical protein -
  AWB57_RS05120 (AWB57_05110) - 1020687..1022987 (-) 2301 WP_127919864.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5461.46 Da        Isoelectric Point: 8.4801

>NTDB_id=295969 AWB57_RS12865 WP_127919999.1 1018821..1018970(-) (comA/nlmT) [Riemerella anatipestifer strain RCAD0133]
MDCGPACLAMIAKYYGKKYPIEYLRENTFITREGVSLLGISEAAKKIGF

Nucleotide


Download         Length: 150 bp        

>NTDB_id=295969 AWB57_RS12865 WP_127919999.1 1018821..1018970(-) (comA/nlmT) [Riemerella anatipestifer strain RCAD0133]
ATGGACTGTGGTCCAGCTTGCCTTGCAATGATAGCAAAATATTACGGCAAGAAATACCCAATAGAATACCTCAGAGAAAA
TACCTTTATCACCCGTGAAGGTGTTTCGCTTTTGGGTATTAGTGAAGCTGCCAAAAAGATAGGATTTTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(1-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

58.333

97.959

0.571
  comA Streptococcus mitis NCTC 12261

46.939

100

0.469
  comA Streptococcus mitis SK321

46.939

100

0.469
  comA Streptococcus pneumoniae Rx1

46.939

100

0.469
  comA Streptococcus pneumoniae D39

46.939

100

0.469
  comA Streptococcus pneumoniae R6

46.939

100

0.469
  comA Streptococcus pneumoniae TIGR4

46.939

100

0.469
  comA Streptococcus gordonii str. Challis substr. CH1

41.667

97.959

0.408

Multiple sequence alignment