Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AN232_RS04185 Genome accession   NZ_CP029727
Coordinates   834890..836410 (+) Length   506 a.a.
NCBI ID   WP_110496388.1    Uniprot ID   -
Organism   Citrobacter sp. CRE-46 strain AR_0157     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 829890..841410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN232_RS04165 (AN232_04165) - 831446..832375 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  AN232_RS04170 (AN232_04170) ilvM 832393..832656 (-) 264 WP_038634609.1 acetolactate synthase 2 small subunit -
  AN232_RS04175 (AN232_04175) ilvG 832653..834299 (-) 1647 WP_110496386.1 acetolactate synthase 2 catalytic subunit -
  AN232_RS04180 (AN232_04180) ilvL 834439..834537 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AN232_RS04185 (AN232_04185) comM 834890..836410 (+) 1521 WP_110496388.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AN232_RS04190 (AN232_04190) maoP 836435..836773 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  AN232_RS04195 (AN232_04195) hdfR 836880..837725 (+) 846 WP_087856748.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55203.16 Da        Isoelectric Point: 7.0252

>NTDB_id=295651 AN232_RS04185 WP_110496388.1 834890..836410(+) (comM) [Citrobacter sp. CRE-46 strain AR_0157]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTAHNLDTYELVGELALTGTLRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QSVCAFLEGKHDLDRPLSADFTPEPLADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSTTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCPPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
EDSATVKQRVISAQERQYRRQNKLNAHLDSQDIHEYCRLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADLEQCDHI
TRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=295651 AN232_RS04185 WP_110496388.1 834890..836410(+) (comM) [Citrobacter sp. CRE-46 strain AR_0157]
ATGTCACTATCGATTGTTCATACACGCGCCGCGCTTGGCGTGAATGCGCCAGCCATTACCATTGAGGTACATATCAGCAA
TGGTCTACCTGGTTTAACCATGGTGGGATTGCCAGAAACAACGGTGAAAGAGGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGTGGGTATGAATTCCCGGCGAAGAAGATAACCATTAACCTCGCTCCTGCCGATCTTCCCAAAGAAGGAGGGCGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAGCCCATAATCTCGATACCTACGAGCTGGT
AGGCGAATTAGCGCTTACAGGCACGCTACGCGGCGTTCCAGGAGCGATTTCAAGCGCAACCGAAGCCATACGAGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACATGGTGAAGGGTGTCTGATTGCCGATCACCTA
CAGTCCGTATGCGCATTTCTCGAAGGGAAGCATGATTTAGACAGACCGTTATCTGCAGACTTCACGCCAGAGCCATTAGC
CGATGATCTGAGCGATGTCATCGGTCAGGAACAAGGCAAACGCGGGTTGGAGCTCACTGCGGCTGGCGGTCACAACCTGC
TGCTTATCGGCCCTCCGGGGACGGGAAAGACCATGCTGGCCAGTCGCCTCAGAGGACTACTCCCGCCGCTTAGCAACGAT
GAGGCACTAGAAAGTGCTGCGATACTCAGCCTGGTCAATTCCACTACGATACAAAAACAGTGGAAGCAGCGCCCCTTTCG
TTCACCGCATCACAGTGCTTCATTAACCGCCATGGTAGGTGGCGGGTCTATACCTGCGCCGGGAGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAATTACCTGAGTTTGAGCGACGCACGTTGGATGCCCTGCGTGAACCTATCGAGTCC
GGGCAGATCCATTTATCCCGCACTCGGGCTAAAATAACCTACCCTGCACGCTTTCAACTCATTGCTGCAATGAATCCAAG
CCCAACGGGTCATTATCAGGGGAACCATAACCGCTGCCCCCCAGAGCAGACGCTGCGTTACCTCAATCGATTATCAGGAC
CGTTTCTTGACCGTTTCGATCTCTCCCTCGAAATCCCTTTGCCTCCGCCCGGCATACTCAGCCAGAGTGCGATGAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATCTCCGCACAAGAGCGTCAGTATCGGCGGCAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATACATGAATATTGCCGACTTCGCAGTGATGATGCGCAGTGGCTTGAAGAGACATTAGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGATTGATAAAGGTCGCCCGAACCATTGCGGATCTCGAGCAATGTGATCATATT
ACCCGTCAGCACTTGCAGGAGGCCGTTGGGTATAGGGCGATAGACAGGTTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.73

100

0.583
  comM Glaesserella parasuis strain SC1401

57.76

100

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429

Multiple sequence alignment