Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQH38_RS05655 Genome accession   NZ_CP035242
Coordinates   1064798..1065346 (+) Length   182 a.a.
NCBI ID   WP_232610237.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059798..1070346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS05625 (EQH38_05950) - 1061121..1061576 (+) 456 WP_001000318.1 HIT family protein -
  EQH38_RS05635 (EQH38_05955) cdd 1061663..1062069 (+) 407 Protein_1085 cytidine deaminase -
  EQH38_RS05640 (EQH38_05960) - 1062082..1062531 (+) 450 WP_000424226.1 YhcH/YjgK/YiaL family protein -
  EQH38_RS05650 (EQH38_05980) - 1063946..1064751 (+) 806 Protein_1088 IS5 family transposase -
  EQH38_RS05655 (EQH38_05985) comA 1064798..1065346 (+) 549 WP_232610237.1 ATP-binding cassette domain-containing protein Regulator
  EQH38_RS05660 (EQH38_05990) - 1065359..1065529 (+) 171 WP_000711943.1 hypothetical protein -
  EQH38_RS05665 (EQH38_06000) gdhA 1066025..1067371 (-) 1347 WP_000199575.1 NADP-specific glutamate dehydrogenase -
  EQH38_RS05670 (EQH38_06005) - 1067712..1068378 (+) 667 Protein_1092 winged helix-turn-helix domain-containing protein -
  EQH38_RS05675 (EQH38_06010) efeB 1068348..1069361 (+) 1014 Protein_1093 iron uptake transporter deferrochelatase/peroxidase subunit -
  EQH38_RS05680 (EQH38_06015) - 1069336..1069914 (+) 579 WP_000252103.1 hypothetical protein -
  EQH38_RS05685 (EQH38_06020) - 1069971..1070213 (-) 243 WP_000710764.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20379.69 Da        Isoelectric Point: 8.4353

>NTDB_id=295644 EQH38_RS05655 WP_232610237.1 1064798..1065346(+) (comA) [Streptococcus pneumoniae strain TVO_1901947]
MDTGKVLFYGININQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISE
MGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVMKGGKIVE
SGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 549 bp        

>NTDB_id=295644 EQH38_RS05655 WP_232610237.1 1064798..1065346(+) (comA) [Streptococcus pneumoniae strain TVO_1901947]
ATTGATACAGGAAAAGTTTTATTTTATGGTATAAATATTAATCAAATAGATAAAAAAATATTAAGTCAAAATTTAGGAGT
AGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGCACGAAGTTACTTCACAAAAGA
TAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAG
ATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAAT
TTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATATAAAAAGTCAGGGCTGTACTC
AAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAG
TCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

42.697

97.802

0.418
  comA Streptococcus mitis NCTC 12261

43.182

96.703

0.418
  comA/nlmT Streptococcus mutans UA159

42.222

98.901

0.418
  comA Streptococcus mitis SK321

42.614

96.703

0.412
  comA Streptococcus pneumoniae D39

42.045

96.703

0.407
  comA Streptococcus pneumoniae R6

42.045

96.703

0.407
  comA Streptococcus pneumoniae Rx1

42.045

96.703

0.407
  comA Streptococcus pneumoniae TIGR4

40.909

96.703

0.396