Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DKY63_RS19075 Genome accession   NZ_CP029693
Coordinates   4074396..4075889 (+) Length   497 a.a.
NCBI ID   WP_110965505.1    Uniprot ID   A0A2Z4RL90
Organism   Pseudomonas putida strain JBC17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4069396..4080889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY63_RS19050 (DKY63_19050) sutA 4070036..4070359 (-) 324 WP_110965501.1 transcriptional regulator SutA -
  DKY63_RS19055 (DKY63_19055) - 4070462..4070887 (-) 426 WP_110965502.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DKY63_RS19060 (DKY63_19060) - 4071103..4072440 (-) 1338 WP_110965503.1 ammonium transporter -
  DKY63_RS19065 (DKY63_19065) glnK 4072476..4072814 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  DKY63_RS19070 (DKY63_19070) - 4073234..4073494 (+) 261 WP_110965504.1 accessory factor UbiK family protein -
  DKY63_RS19075 (DKY63_19075) comM 4074396..4075889 (+) 1494 WP_110965505.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DKY63_RS19080 (DKY63_19080) - 4076006..4077982 (-) 1977 WP_110965506.1 methyl-accepting chemotaxis protein -
  DKY63_RS19090 (DKY63_19090) - 4078149..4079069 (-) 921 WP_110965507.1 LysR substrate-binding domain-containing protein -
  DKY63_RS19095 (DKY63_19095) - 4079228..4080625 (+) 1398 WP_110967945.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53375.34 Da        Isoelectric Point: 7.7377

>NTDB_id=295383 DKY63_RS19075 WP_110965505.1 4074396..4075889(+) (comM) [Pseudomonas putida strain JBC17]
MSLSIVHSRAQVGVDAPAVTVEVHLANGLPSLTMVGLPETAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGEVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYVSDGLIHAAKPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARERVRFPARFQLVAAMNPCPCGYLGEPTGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPIPRP
EDDSNSASALVADARERQQKRQRCANAFLDLPGLKRHCTLSTADEHWLESACERLTLSLRSAHRLLKVARTLADLERVDE
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=295383 DKY63_RS19075 WP_110965505.1 4074396..4075889(+) (comM) [Pseudomonas putida strain JBC17]
ATGTCCCTTTCCATCGTCCACAGCCGCGCCCAGGTTGGCGTGGATGCACCCGCTGTCACCGTCGAAGTTCATCTGGCCAA
TGGTTTGCCGTCGCTGACCATGGTCGGCTTGCCCGAGACCGCAGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAATTCGGGGCTGCAGTTTCCGGCGCGGCGGATCACGCTGAATCTGGCGCCGGCGGATTTACCCAAGGATGGCGGGCGG
TTCGATCTGGCCATTGCCCTGGGGATTCTGTCGGCCAGCGTGCAGGTGCCGACCCTGACCCTCGATGACGTGGAATGCCT
TGGCGAACTGGCCTTGTCCGGCGAAGTGCGGGCGGTGCGCGGGGTACTGCCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCTTGCCTGGCGTCGGGCTTGAAGGTGATTGCGGTGGATCATCTG
CTGCAGGCGGTGGCGCATTTCAACGGGCATACACCGATCGAGCCTTATGTCTCGGACGGTTTGATCCACGCCGCCAAACC
CTATCCTGACCTCAATGAGGTGCAGGGCCAAATGGCGGCGAAACGCGCGCTGCTGATTGCGGCAGCCGGTGCGCACAACC
TGCTGTTCAGCGGGCCTCCGGGAACGGGCAAAACCTTGCTGGCCAGTCGATTGCCGGGGTTGCTGCCGCCACTGAGCGAG
AGCGAAGCCCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTGGTGCGCCGCTCACCCACTGGCCGCAGCGACCGTTTCG
CCAGCCCCATCACTCCGCGTCCGGTCCGGCGCTGGTCGGCGGCAGTTCAAAACCGCAACCCGGCGAAATCACCCTGGCCC
ATCACGGCGTACTTTTTCTGGATGAACTTCCGGAGTTTGATCGCAAGGTATTGGAGGTTTTAAGAGAGCCACTGGAGTCG
GGCCATATCGTGATTTCCCGAGCCAGGGAGCGCGTACGTTTTCCGGCGCGCTTTCAACTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGATATCTGGGCGAACCAACTGGACGATGTTCATGCACACCGGACATGGTTCAGCGCTATCGCAACAAACTGT
CCGGACCGCTGCTGGATCGCATCGACCTGCACCTGACGGTTGCCCGGGAAGCCACCGCCTTGAACCCCATCCCCAGGCCC
GAAGATGACAGCAATAGCGCCTCTGCTCTCGTCGCCGACGCGCGCGAGCGCCAGCAGAAACGCCAGCGTTGCGCGAATGC
CTTTCTCGATCTGCCGGGGTTGAAACGACACTGCACGTTATCCACAGCCGATGAGCACTGGCTGGAGTCAGCCTGTGAGC
GGCTGACCCTGTCGCTGCGTTCGGCGCATCGGTTGCTCAAGGTGGCGCGCACACTGGCTGACCTGGAGCGGGTCGATGAG
ATCAGTCGGGAGCATCTGGCCGAGGCGTTGCAGTATCGGCCGGCGACTCAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4RL90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.709

100

0.549
  comM Vibrio cholerae strain A1552

54.527

100

0.545
  comM Haemophilus influenzae Rd KW20

52.8

100

0.531
  comM Glaesserella parasuis strain SC1401

52.2

100

0.525
  comM Legionella pneumophila str. Paris

50.602

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.89

100

0.451

Multiple sequence alignment