Detailed information
Bioinformatically predicted
Overview
| Name | comA | Type | Regulator |
| Locus tag | C0060_RS03130 | Genome accession | NZ_CP029614 |
| Coordinates | 650482..652644 (-) | Length | 720 a.a. |
| NCBI ID | WP_086874732.1 | Uniprot ID | - |
| Organism | Lactobacillus johnsonii strain Byun-jo-01 | ||
| Function | processing and transport of ComC (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 653199..654248 | 650482..652644 | flank | 555 |
Gene organization within MGE regions
Location: 650482..654248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0060_RS03130 (LJ1_00636) | comA | 650482..652644 (-) | 2163 | WP_086874732.1 | peptide cleavage/export ABC transporter | Regulator |
| C0060_RS03135 (LJ1_00637) | - | 652657..653061 (-) | 405 | WP_241033140.1 | LytTR family DNA-binding domain-containing protein | - |
| C0060_RS03140 (LJ1_00638) | - | 653199..654248 (-) | 1050 | WP_113886596.1 | IS30-like element ISLjo1 family transposase | - |
Sequence
Protein
Download Length: 720 a.a. Molecular weight: 81222.45 Da Isoelectric Point: 6.5844
>NTDB_id=294274 C0060_RS03130 WP_086874732.1 650482..652644(-) (comA) [Lactobacillus johnsonii strain Byun-jo-01]
MLFKYKSVYVPQVDEMDCGVACLAMILKQYQSRVSLAHLRHEARTNLEGTTALGLVKTAQKFNFKTEAVKADMSLFNEDT
IQYPFIVHVLKQGELLHYYVVLKNTKNYLVIADPDPSVGIIKMPKDKFAQEWTGIALFMVPNEDFEPIKEKKNNLWSLFP
YMFKQKRLMINIILAALLMTIISICSSYFVQGIIDTYIPDGTYQTLSILAVGLLIAYIFNSIFSYGQNFLLNVLGQRLSI
DLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLAIVIVMGLVLAAQNTTLFGITLLALPVYA
IVILGFTKKFEKLNDEQMESNAVLSSSVIEDIQGIETIKALNSEDTRYRRIDSQFVNYLKKSFKYSKTESLQTALKTFIQ
LSLNVIILWVGARVVMQGEMSIGQLMTFNALLSYFIDPLQNIINLQPRLQSASVAQNRLNEVYQVQSEFNADTSIQNSAA
LEGMIEYKHVDYRYGYGTDVLKDINLKIKPDEKLAIVGMSGSGKSTMMVKLLVDFFSPSKGEVTLNGHATSEVNKHTLRS
YVNYVPQTPYIFSGTVKENLLLGCRADISEEEVIKACQIAGIDQEIANLPLQFETKLDENAKILSGGQKQRLTIARALLS
PAKVFIFDEVTSGLDTITEKRVVDNLMKLKDKTIIFIAHRLAIAERADKVVVIDKGQIVEEGSHEELMEQHGFYYDLVKG
MLFKYKSVYVPQVDEMDCGVACLAMILKQYQSRVSLAHLRHEARTNLEGTTALGLVKTAQKFNFKTEAVKADMSLFNEDT
IQYPFIVHVLKQGELLHYYVVLKNTKNYLVIADPDPSVGIIKMPKDKFAQEWTGIALFMVPNEDFEPIKEKKNNLWSLFP
YMFKQKRLMINIILAALLMTIISICSSYFVQGIIDTYIPDGTYQTLSILAVGLLIAYIFNSIFSYGQNFLLNVLGQRLSI
DLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLAIVIVMGLVLAAQNTTLFGITLLALPVYA
IVILGFTKKFEKLNDEQMESNAVLSSSVIEDIQGIETIKALNSEDTRYRRIDSQFVNYLKKSFKYSKTESLQTALKTFIQ
LSLNVIILWVGARVVMQGEMSIGQLMTFNALLSYFIDPLQNIINLQPRLQSASVAQNRLNEVYQVQSEFNADTSIQNSAA
LEGMIEYKHVDYRYGYGTDVLKDINLKIKPDEKLAIVGMSGSGKSTMMVKLLVDFFSPSKGEVTLNGHATSEVNKHTLRS
YVNYVPQTPYIFSGTVKENLLLGCRADISEEEVIKACQIAGIDQEIANLPLQFETKLDENAKILSGGQKQRLTIARALLS
PAKVFIFDEVTSGLDTITEKRVVDNLMKLKDKTIIFIAHRLAIAERADKVVVIDKGQIVEEGSHEELMEQHGFYYDLVKG
Nucleotide
Download Length: 2163 bp
>NTDB_id=294274 C0060_RS03130 WP_086874732.1 650482..652644(-) (comA) [Lactobacillus johnsonii strain Byun-jo-01]
ATGTTATTCAAATATAAATCTGTTTATGTACCTCAAGTAGATGAGATGGATTGCGGAGTTGCTTGTCTAGCAATGATCTT
AAAGCAGTATCAATCTCGTGTGTCTTTAGCACATTTGCGTCACGAAGCTCGCACAAATCTTGAAGGCACAACTGCGCTGG
GACTAGTTAAAACAGCACAGAAATTTAATTTTAAAACTGAAGCCGTAAAAGCTGATATGTCTCTTTTTAATGAGGATACT
ATTCAATACCCTTTTATCGTGCATGTTCTTAAGCAAGGAGAATTACTTCATTATTACGTAGTTCTTAAAAATACTAAGAA
TTACTTAGTAATTGCCGATCCTGATCCATCAGTTGGCATAATAAAGATGCCTAAAGATAAATTTGCTCAAGAATGGACTG
GTATTGCGCTTTTTATGGTTCCGAATGAAGATTTTGAACCAATTAAAGAAAAGAAAAATAACCTATGGTCTCTCTTTCCA
TATATGTTTAAGCAAAAGCGGCTGATGATTAATATCATTTTAGCCGCTTTATTAATGACAATAATTAGTATTTGTAGTTC
ATACTTTGTGCAAGGAATAATCGATACTTATATTCCCGATGGAACTTATCAGACTCTTTCAATTTTAGCTGTTGGACTAT
TAATTGCTTATATTTTTAATTCAATCTTTTCTTATGGACAGAATTTTTTATTAAATGTTCTAGGTCAAAGATTAAGTATT
GATTTAAACCTCCAATATATAAGGCATATTTTTGAATTGCCAATGGAATTCTTTGTGACTAGAAGAACTGGTGAAATAAC
CTCACGTTTCTCTGATGCAAGTAGAATTATTGATGCTCTAGCAAGTACTGTTATTTCACTTTTCTTAGACTTAGCGATTG
TAATTGTAATGGGACTAGTGTTAGCTGCTCAAAATACAACATTATTTGGGATCACATTATTAGCTTTACCAGTGTATGCG
ATAGTAATTCTAGGATTTACTAAGAAATTTGAAAAATTAAATGATGAACAGATGGAGAGTAATGCAGTACTAAGTTCTTC
AGTTATCGAAGATATTCAAGGTATTGAAACTATCAAAGCTCTCAATAGTGAAGATACAAGATATCGCAGAATCGATAGTC
AATTTGTAAACTATTTAAAGAAGTCATTTAAATATAGTAAGACTGAGAGTTTGCAGACGGCCTTAAAGACATTTATTCAA
CTATCTCTTAATGTAATTATTTTATGGGTTGGAGCAAGAGTAGTGATGCAAGGAGAGATGAGTATTGGTCAATTAATGAC
TTTTAATGCATTACTATCTTATTTCATTGACCCACTTCAAAATATTATTAACTTACAACCTCGGCTTCAATCTGCGAGTG
TTGCACAAAATAGATTGAACGAGGTTTATCAGGTGCAAAGTGAATTTAATGCAGATACTTCTATCCAGAACTCAGCTGCT
TTAGAAGGAATGATTGAATACAAGCATGTTGATTATCGATATGGTTATGGTACTGATGTTTTAAAAGATATTAATCTAAA
AATTAAGCCAGATGAAAAATTAGCAATTGTTGGGATGAGTGGATCAGGAAAATCGACGATGATGGTTAAGTTACTCGTTG
ATTTCTTTTCACCAAGTAAGGGAGAAGTAACTTTAAATGGTCATGCAACTAGTGAAGTTAATAAACATACCTTACGCTCG
TATGTTAACTATGTTCCTCAAACGCCATATATCTTTTCTGGAACAGTTAAGGAGAATTTATTACTGGGATGTAGAGCTGA
TATTAGCGAAGAAGAGGTAATTAAAGCCTGTCAGATTGCTGGCATTGATCAGGAGATAGCTAATTTGCCCCTACAATTTG
AGACAAAGTTAGATGAGAATGCGAAGATTTTATCAGGTGGACAAAAGCAGAGATTAACTATTGCTAGAGCATTACTTTCG
CCAGCAAAAGTTTTTATCTTTGATGAAGTAACAAGTGGTTTAGATACAATTACAGAAAAAAGAGTAGTTGACAATCTTAT
GAAACTAAAAGACAAGACAATCATTTTTATTGCACACCGTCTAGCCATTGCGGAACGTGCAGATAAGGTCGTTGTAATTG
ACAAGGGGCAGATTGTTGAAGAAGGAAGTCATGAAGAGCTTATGGAGCAACATGGTTTTTATTATGACTTAGTAAAGGGA
TAG
ATGTTATTCAAATATAAATCTGTTTATGTACCTCAAGTAGATGAGATGGATTGCGGAGTTGCTTGTCTAGCAATGATCTT
AAAGCAGTATCAATCTCGTGTGTCTTTAGCACATTTGCGTCACGAAGCTCGCACAAATCTTGAAGGCACAACTGCGCTGG
GACTAGTTAAAACAGCACAGAAATTTAATTTTAAAACTGAAGCCGTAAAAGCTGATATGTCTCTTTTTAATGAGGATACT
ATTCAATACCCTTTTATCGTGCATGTTCTTAAGCAAGGAGAATTACTTCATTATTACGTAGTTCTTAAAAATACTAAGAA
TTACTTAGTAATTGCCGATCCTGATCCATCAGTTGGCATAATAAAGATGCCTAAAGATAAATTTGCTCAAGAATGGACTG
GTATTGCGCTTTTTATGGTTCCGAATGAAGATTTTGAACCAATTAAAGAAAAGAAAAATAACCTATGGTCTCTCTTTCCA
TATATGTTTAAGCAAAAGCGGCTGATGATTAATATCATTTTAGCCGCTTTATTAATGACAATAATTAGTATTTGTAGTTC
ATACTTTGTGCAAGGAATAATCGATACTTATATTCCCGATGGAACTTATCAGACTCTTTCAATTTTAGCTGTTGGACTAT
TAATTGCTTATATTTTTAATTCAATCTTTTCTTATGGACAGAATTTTTTATTAAATGTTCTAGGTCAAAGATTAAGTATT
GATTTAAACCTCCAATATATAAGGCATATTTTTGAATTGCCAATGGAATTCTTTGTGACTAGAAGAACTGGTGAAATAAC
CTCACGTTTCTCTGATGCAAGTAGAATTATTGATGCTCTAGCAAGTACTGTTATTTCACTTTTCTTAGACTTAGCGATTG
TAATTGTAATGGGACTAGTGTTAGCTGCTCAAAATACAACATTATTTGGGATCACATTATTAGCTTTACCAGTGTATGCG
ATAGTAATTCTAGGATTTACTAAGAAATTTGAAAAATTAAATGATGAACAGATGGAGAGTAATGCAGTACTAAGTTCTTC
AGTTATCGAAGATATTCAAGGTATTGAAACTATCAAAGCTCTCAATAGTGAAGATACAAGATATCGCAGAATCGATAGTC
AATTTGTAAACTATTTAAAGAAGTCATTTAAATATAGTAAGACTGAGAGTTTGCAGACGGCCTTAAAGACATTTATTCAA
CTATCTCTTAATGTAATTATTTTATGGGTTGGAGCAAGAGTAGTGATGCAAGGAGAGATGAGTATTGGTCAATTAATGAC
TTTTAATGCATTACTATCTTATTTCATTGACCCACTTCAAAATATTATTAACTTACAACCTCGGCTTCAATCTGCGAGTG
TTGCACAAAATAGATTGAACGAGGTTTATCAGGTGCAAAGTGAATTTAATGCAGATACTTCTATCCAGAACTCAGCTGCT
TTAGAAGGAATGATTGAATACAAGCATGTTGATTATCGATATGGTTATGGTACTGATGTTTTAAAAGATATTAATCTAAA
AATTAAGCCAGATGAAAAATTAGCAATTGTTGGGATGAGTGGATCAGGAAAATCGACGATGATGGTTAAGTTACTCGTTG
ATTTCTTTTCACCAAGTAAGGGAGAAGTAACTTTAAATGGTCATGCAACTAGTGAAGTTAATAAACATACCTTACGCTCG
TATGTTAACTATGTTCCTCAAACGCCATATATCTTTTCTGGAACAGTTAAGGAGAATTTATTACTGGGATGTAGAGCTGA
TATTAGCGAAGAAGAGGTAATTAAAGCCTGTCAGATTGCTGGCATTGATCAGGAGATAGCTAATTTGCCCCTACAATTTG
AGACAAAGTTAGATGAGAATGCGAAGATTTTATCAGGTGGACAAAAGCAGAGATTAACTATTGCTAGAGCATTACTTTCG
CCAGCAAAAGTTTTTATCTTTGATGAAGTAACAAGTGGTTTAGATACAATTACAGAAAAAAGAGTAGTTGACAATCTTAT
GAAACTAAAAGACAAGACAATCATTTTTATTGCACACCGTCTAGCCATTGCGGAACGTGCAGATAAGGTCGTTGTAATTG
ACAAGGGGCAGATTGTTGAAGAAGGAAGTCATGAAGAGCTTATGGAGCAACATGGTTTTTATTATGACTTAGTAAAGGGA
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA | Streptococcus mitis NCTC 12261 |
56.522 |
99.028 |
0.56 |
| comA | Streptococcus mitis SK321 |
56.241 |
99.028 |
0.557 |
| comA | Streptococcus pneumoniae Rx1 |
56.101 |
99.028 |
0.556 |
| comA | Streptococcus pneumoniae D39 |
56.101 |
99.028 |
0.556 |
| comA | Streptococcus pneumoniae R6 |
56.101 |
99.028 |
0.556 |
| comA | Streptococcus pneumoniae TIGR4 |
55.961 |
99.028 |
0.554 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
54.839 |
99.028 |
0.543 |
| comA/nlmT | Streptococcus mutans UA159 |
53.249 |
98.333 |
0.524 |