Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DLK06_RS19450 Genome accession   NZ_CP029610
Coordinates   3959211..3960698 (+) Length   495 a.a.
NCBI ID   WP_032063100.1    Uniprot ID   A0A009QQA1
Organism   Acinetobacter pittii strain ST220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3954211..3965698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS19425 (DLK06_19445) ribD 3955131..3956216 (-) 1086 WP_032070645.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  DLK06_RS19430 (DLK06_19450) nrdR 3956232..3956690 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  DLK06_RS19435 (DLK06_19455) amtB 3956849..3958243 (-) 1395 WP_005079483.1 ammonium transporter -
  DLK06_RS19440 (DLK06_19460) glnK 3958301..3958639 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  DLK06_RS19445 (DLK06_19465) - 3958918..3959145 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  DLK06_RS19450 (DLK06_19470) comM 3959211..3960698 (+) 1488 WP_032063100.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DLK06_RS19455 (DLK06_19475) yieF 3960802..3961347 (+) 546 WP_005065691.1 NADPH-dependent FMN reductase -
  DLK06_RS19460 (DLK06_19480) mocR 3961372..3962805 (-) 1434 WP_126117778.1 PLP-dependent aminotransferase family protein -
  DLK06_RS19465 (DLK06_19485) - 3962917..3963693 (+) 777 WP_005065687.1 aldolase -
  DLK06_RS19470 (DLK06_19490) - 3963709..3964587 (+) 879 WP_032070646.1 dihydrodipicolinate synthase family protein -
  DLK06_RS19475 (DLK06_19495) - 3964629..3965441 (-) 813 WP_002121202.1 TorF family putative porin -
  DLK06_RS19480 (DLK06_19500) - 3965480..3965668 (-) 189 WP_014208159.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54465.58 Da        Isoelectric Point: 7.7209

>NTDB_id=294211 DLK06_RS19450 WP_032063100.1 3959211..3960698(+) (comM) [Acinetobacter pittii strain ST220]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=294211 DLK06_RS19450 WP_032063100.1 3959211..3960698(+) (comM) [Acinetobacter pittii strain ST220]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGTCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCCCTTTCTAAT
CAAGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QQA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment