Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DLD99_RS28000 Genome accession   NZ_CP029608
Coordinates   6093433..6094926 (+) Length   497 a.a.
NCBI ID   WP_114886301.1    Uniprot ID   A0A345RXZ6
Organism   Pseudomonas kribbensis strain 46-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6088433..6099926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD99_RS27975 (DLD99_27970) sutA 6088799..6089125 (-) 327 WP_007951900.1 transcriptional regulator SutA -
  DLD99_RS27980 (DLD99_27975) - 6089228..6089653 (-) 426 WP_114886297.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DLD99_RS27985 (DLD99_27980) - 6089869..6091206 (-) 1338 WP_114886299.1 ammonium transporter -
  DLD99_RS27990 (DLD99_27985) glnK 6091244..6091582 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  DLD99_RS27995 (DLD99_27990) - 6091996..6092256 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  DLD99_RS29285 - 6093085..6093255 (+) 171 WP_167443788.1 hypothetical protein -
  DLD99_RS28000 (DLD99_27995) comM 6093433..6094926 (+) 1494 WP_114886301.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DLD99_RS28005 (DLD99_28000) - 6095032..6097008 (-) 1977 WP_114886302.1 methyl-accepting chemotaxis protein -
  DLD99_RS28010 (DLD99_28005) - 6097191..6098111 (-) 921 WP_085708898.1 LysR substrate-binding domain-containing protein -
  DLD99_RS28015 (DLD99_28010) - 6098269..6099663 (+) 1395 WP_114886307.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52842.97 Da        Isoelectric Point: 8.0040

>NTDB_id=294084 DLD99_RS28000 WP_114886301.1 6093433..6094926(+) (comM) [Pseudomonas kribbensis strain 46-2]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGTPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADETWLETACERLTLSLRSAHRLLKVARTLADLETCAD
IRREHLAEALQYRPASQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=294084 DLD99_RS28000 WP_114886301.1 6093433..6094926(+) (comM) [Pseudomonas kribbensis strain 46-2]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTTCACCTCGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCCCCGGCGGACTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGTGTTCAGGTGCCGACATTGACGCTGGATGATGTGGAGTGCCT
TGGCGAACTGGCGTTATCCGGCGCAGTGCGGGCTGTGCGCGGTGTGTTGCCGGCGGCACTGGCAGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCATGCCTCGCATCGGGATTGAGGGTGATCGCGGTGGATCATCTG
CTGGAGGCAGTGGCGCATTTCAACGGGCATACACCGGTCGAACCCTATGTCTCGGATGGGTTGATCCATGCCGCCAAACC
CTATCCCGACCTGAACGAAGTGCAAGGCCAACTGGCCGCCAAACGGGCGCTGCTGGTTGCCGCTGCCGGCGCACATAATC
TGCTGTTCAGCGGACCACCCGGGACGGGCAAGACATTGCTGGCCAGTCGATTGCCGGGATTGCTGCCTCCGCTGGCCGAG
AGTGAAGCGCTGGAGGTGGCGGCGATTCAATCCGTCGCCAGCGGCACGCCGCTCACTCATTGGCCCCAGCGCCCGTTCCG
CCAACCGCATCACTCGGCCTCCGGACCGGCACTGGTCGGCGGCAGCTCAAAACCGCAACCCGGCGAAATCACCCTCGCCC
ATCACGGTGTGCTGTTTCTCGATGAACTGCCCGAGTTTGATCGCAAGGTGCTGGAGGTTCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTGATTGCCCGAGCCAAGGAGCGAGTGCGGTTTCCCGCAAGATTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGATATCTTGGCGAGCCAAGCGGCAAGTGCTCGTGTACACCGGACATGGTGCAGCGCTATCGCAACAAGCTCT
CGGGGCCGTTGCTGGATCGAATCGATTTGCACCTGACGGTGGCGCGAGAGGCCACAGCGTTGAACCCGGCGGTGAAACCG
GGAGAGGACAGTGCCAGTGCGGCGGCGTTGGTCGCCGAAGCCCGCGAACGCCAGCAAAAGCGCCAGGGCTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAGGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAAACGGCGTGCGAAA
GGCTGACGTTGTCGCTGCGCTCGGCGCATCGGTTGCTCAAGGTCGCGCGGACGCTGGCGGATCTGGAAACGTGCGCGGAT
ATCAGACGCGAGCACCTGGCCGAAGCGTTGCAGTATCGGCCGGCGAGTCAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345RXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.59

100

0.531
  comM Legionella pneumophila str. Paris

49.8

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.8

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment