Detailed information NTG0293562

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: DLJ51_RS00915
• Genome accession: NZ_CP029560
• Coordinates: 155706..156143 (+)
• Length: 145 a.a.
• NCBI ID: WP_019781940.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NIDR 6715-7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 150706..161143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLJ51_RS00885 (DLJ51_00885)	-	152038..152406 (+)	369	WP_019781971.1	DUF1033 family protein	-
DLJ51_RS00890 (DLJ51_00890)	comGA/cglA	152832..153779 (+)	948	WP_019777327.1	competence type IV pilus ATPase ComGA	Machinery gene
DLJ51_RS00895 (DLJ51_00895)	comYB	153703..154746 (+)	1044	WP_002959504.1	competence type IV pilus assembly protein ComGB	Machinery gene
DLJ51_RS00900 (DLJ51_00900)	comYC	154743..155069 (+)	327	WP_019770073.1	competence type IV pilus major pilin ComGC	Machinery gene
DLJ51_RS00905 (DLJ51_00905)	comYD	155023..155457 (+)	435	WP_254051091.1	competence type IV pilus minor pilin ComGD	Machinery gene
DLJ51_RS00910 (DLJ51_00910)	comYE	155429..155722 (+)	294	WP_002959510.1	competence type IV pilus minor pilin ComGE	Machinery gene
DLJ51_RS00915 (DLJ51_00915)	comYF	155706..156143 (+)	438	WP_019781940.1	competence type IV pilus minor pilin ComGF	Machinery gene
DLJ51_RS00920 (DLJ51_00920)	comGG	156121..156582 (+)	462	WP_019785527.1	competence type IV pilus minor pilin ComGG	-
DLJ51_RS00930 (DLJ51_00930)	-	156784..157050 (+)	267	WP_002959516.1	type II toxin-antitoxin system RelE/ParE family toxin	-
DLJ51_RS00935 (DLJ51_00935)	-	157037..157312 (+)	276	WP_109982370.1	helix-turn-helix domain-containing protein	-
DLJ51_RS00940 (DLJ51_00940)	comYH	157411..158364 (+)	954	WP_019771347.1	class I SAM-dependent methyltransferase	Machinery gene
DLJ51_RS00945 (DLJ51_00945)	-	158427..159623 (+)	1197	WP_019771614.1	acetate kinase	-
DLJ51_RS00950 (DLJ51_00950)	-	160101..161006 (+)	906	WP_019769860.1	LysR family transcriptional regulator	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16261.67 Da
• Isoelectric Point: 8.2388

>NTDB_id=293562 DLJ51_RS00915 WP_019781940.1 155706..156143(+) (comYF) [Streptococcus sobrinus strain NIDR 6715-7]
MWLKTRIRSFTLLECLVALLVIAGSVMVYQGLTQVLTSNVAYISKNDEEDWLLFCQQLRSELSGTDLDRVADNKLYVKKG
DQPLAFGQSRSDDFRKTNADGRGYQPMLFGLKACTISQTGQTVTISLTLKSGLERTFVYDFAKTS

Nucleotide

• Length: 438 bp

>NTDB_id=293562 DLJ51_RS00915 WP_019781940.1 155706..156143(+) (comYF) [Streptococcus sobrinus strain NIDR 6715-7]
ATGTGGCTAAAAACTAGAATTCGATCCTTCACCCTCTTGGAGTGCTTGGTGGCCCTCTTGGTCATCGCTGGCAGTGTCAT
GGTCTATCAGGGGCTAACCCAGGTTTTGACCAGCAATGTTGCCTACATCAGCAAGAATGATGAGGAGGACTGGCTCCTCT
TTTGTCAGCAGCTTCGCTCAGAGCTATCTGGGACTGACTTGGACCGGGTGGCGGACAATAAACTTTATGTCAAAAAGGGT
GACCAGCCTCTAGCCTTTGGCCAGTCCCGCTCGGATGATTTTCGCAAGACCAATGCTGACGGCCGGGGCTATCAGCCCAT
GCTCTTTGGCCTCAAGGCCTGCACCATCAGCCAGACTGGTCAGACCGTCACTATTTCGCTGACTCTGAAATCAGGCTTAG
AAAGGACCTTTGTCTATGATTTTGCAAAAACGTCTTAG

Domains

Predicted by InterProScan.

• Putative Competence protein ComGF (ComGF) (43-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	63.309	95.862	0.607
comYF	Streptococcus mutans UA159	62.59	95.862	0.6
comGF	Lactococcus lactis subsp. cremoris KW2	50.35	98.621	0.497
comGF/cglF	Streptococcus mitis NCTC 12261	43.448	100	0.434
comGF/cglF	Streptococcus pneumoniae Rx1	44.928	95.172	0.428
comGF/cglF	Streptococcus pneumoniae D39	44.928	95.172	0.428
comGF/cglF	Streptococcus pneumoniae R6	44.928	95.172	0.428
comGF/cglF	Streptococcus pneumoniae TIGR4	44.928	95.172	0.428
comGF/cglF	Streptococcus mitis SK321	41.379	100	0.414