Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DCD74_RS09505 Genome accession   NZ_CP029556
Coordinates   1963192..1964682 (+) Length   496 a.a.
NCBI ID   WP_112927097.1    Uniprot ID   A0A344J775
Organism   Solilutibacter oculi strain 83-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1958192..1969682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCD74_RS09480 (DCD74_09480) speE 1960183..1961037 (+) 855 WP_112927092.1 polyamine aminopropyltransferase -
  DCD74_RS09485 (DCD74_09485) - 1961169..1961429 (+) 261 WP_112927093.1 hypothetical protein -
  DCD74_RS09490 (DCD74_09490) - 1961525..1962340 (+) 816 WP_162615970.1 GGDEF domain-containing protein -
  DCD74_RS09495 (DCD74_09495) - 1962388..1962726 (-) 339 WP_112927095.1 P-II family nitrogen regulator -
  DCD74_RS09500 (DCD74_09500) - 1962882..1963148 (+) 267 WP_112927096.1 ubiquinone biosynthesis accessory factor UbiK -
  DCD74_RS09505 (DCD74_09505) comM 1963192..1964682 (+) 1491 WP_112927097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DCD74_RS09510 (DCD74_09510) - 1964802..1966856 (+) 2055 WP_112927098.1 S9 family peptidase -
  DCD74_RS09515 (DCD74_09515) - 1967030..1968754 (+) 1725 WP_162615971.1 potassium/proton antiporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 51838.89 Da        Isoelectric Point: 9.0309

>NTDB_id=293492 DCD74_RS09505 WP_112927097.1 1963192..1964682(+) (comM) [Solilutibacter oculi strain 83-4]
MGLARVMSRARVGVRAPQVVVEVHVGGGLPSLSIVGLPEAAVREAKDRVRAAIVCAQLEYPAGRITINLAPADLRKEGGG
FDLPIALGILAASDQLPLQALASIEFLGELGLSGELRPVAGVLPAALAATEAGRSLILPAANGAEAALAGRAGIATARTL
LEVCAALRGQKTLPPAEAASAIPTLPSPDLRDVRGQAQARRALEIAACGQHHLLLLGSPGCGKTLLASRLPGILPPMGEA
EALETAAVHSVSGQPFEPARWRQRPFRSPHHTASAVALAGGGSSPRPGEISLAHHGVLFLDELPEWNRAALEVLRQPLES
GTVTVSRAARQCEFPARVQLVAAMNPCPCGWAGDVSGRCRCSPDIIARYRARISGPLLDRIDLQLAMQRLPPAALACDAP
PAEDSARVRARVSLARDRQLARAGKPNALLEPAELARDGRLQTGDQALLAQAIDRLQLSARGVHRILRVARSIADLAGSG
DIHTPHLAEAIGYRTL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=293492 DCD74_RS09505 WP_112927097.1 1963192..1964682(+) (comM) [Solilutibacter oculi strain 83-4]
ATGGGACTGGCCCGGGTGATGAGCCGGGCGCGCGTGGGCGTGCGCGCGCCGCAGGTGGTGGTGGAAGTGCACGTGGGCGG
CGGGCTGCCCTCGCTGTCGATCGTCGGCCTGCCGGAGGCCGCGGTGCGCGAGGCCAAGGACCGCGTGCGGGCGGCCATCG
TCTGCGCGCAGCTGGAATATCCGGCCGGGCGCATCACCATCAACCTCGCGCCGGCTGACCTGCGCAAGGAAGGCGGCGGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCCAGCGACCAGCTGCCGCTGCAGGCGCTGGCGTCCATCGAATTCCT
CGGCGAGCTGGGCCTGAGCGGCGAGCTGCGGCCGGTGGCCGGCGTGCTGCCGGCGGCGCTGGCCGCCACCGAGGCGGGAC
GAAGCCTGATCCTGCCCGCCGCCAACGGCGCCGAAGCCGCGCTCGCCGGACGCGCCGGCATCGCCACCGCACGGACATTG
CTGGAAGTCTGCGCGGCGTTGCGCGGCCAGAAGACCCTGCCGCCCGCCGAAGCCGCATCCGCCATCCCCACCCTGCCGTC
GCCCGACCTGCGCGATGTGCGCGGGCAGGCGCAAGCGCGGCGCGCGCTGGAGATCGCCGCCTGTGGCCAGCACCATCTGC
TGCTGCTCGGCAGCCCGGGCTGTGGCAAGACGCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCGCCGATGGGCGAAGCC
GAGGCGCTGGAAACCGCCGCCGTGCATTCGGTGTCCGGGCAGCCGTTCGAACCGGCACGCTGGCGGCAGCGCCCGTTCCG
CAGCCCGCACCACACGGCGAGCGCGGTGGCGCTGGCCGGCGGCGGCAGTTCGCCGCGCCCCGGCGAGATCTCGCTGGCGC
ATCACGGCGTGCTGTTCCTCGACGAACTGCCGGAGTGGAATCGCGCCGCGCTGGAGGTGCTGCGGCAGCCGCTGGAGTCG
GGCACGGTCACGGTGTCGCGGGCGGCGCGGCAATGCGAATTCCCGGCGCGCGTCCAGCTGGTGGCGGCGATGAACCCGTG
TCCCTGCGGCTGGGCCGGGGATGTCTCGGGGCGATGTCGCTGCAGCCCAGACATCATCGCCCGCTACCGCGCCCGGATCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCAGCTGGCGATGCAGCGGCTGCCGCCCGCCGCCCTGGCCTGCGATGCGCCC
CCGGCCGAGGACAGCGCCCGCGTCCGCGCACGGGTCAGCCTTGCCCGCGACCGCCAGCTGGCCCGCGCCGGCAAACCGAA
CGCGCTGCTGGAGCCGGCCGAACTCGCCCGCGACGGCCGTCTGCAGACCGGCGACCAGGCCCTGCTGGCGCAGGCCATCG
ACCGCCTGCAGCTGAGTGCGCGCGGGGTCCACCGCATCCTGAGGGTGGCGCGGAGCATCGCCGACCTCGCCGGCAGCGGC
GACATCCACACCCCGCACCTGGCCGAAGCCATCGGCTACCGGACCCTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344J775

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.892

100

0.544
  comM Vibrio cholerae strain A1552

53.924

100

0.54
  comM Haemophilus influenzae Rd KW20

53.386

100

0.54
  comM Glaesserella parasuis strain SC1401

52.789

100

0.534
  comM Legionella pneumophila str. Paris

49.598

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.598

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.454

Multiple sequence alignment