Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DCD74_RS07505 Genome accession   NZ_CP029556
Coordinates   1563645..1564133 (-) Length   162 a.a.
NCBI ID   WP_112926761.1    Uniprot ID   A0A344J688
Organism   Solilutibacter oculi strain 83-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1558645..1569133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCD74_RS07495 (DCD74_07495) - 1559463..1561448 (-) 1986 WP_112926760.1 S9 family peptidase -
  DCD74_RS07500 (DCD74_07500) - 1561536..1563509 (-) 1974 WP_112927733.1 OPT family oligopeptide transporter -
  DCD74_RS07505 (DCD74_07505) ssb 1563645..1564133 (-) 489 WP_112926761.1 single-stranded DNA-binding protein Machinery gene
  DCD74_RS07510 (DCD74_07510) - 1564318..1565301 (+) 984 WP_112926762.1 polyprenyl synthetase family protein -
  DCD74_RS07515 (DCD74_07515) - 1565308..1565664 (-) 357 WP_112926763.1 DUF488 domain-containing protein -
  DCD74_RS07520 (DCD74_07520) - 1565678..1566466 (-) 789 WP_112926764.1 dienelactone hydrolase family protein -
  DCD74_RS07525 (DCD74_07525) murD 1566536..1567921 (-) 1386 WP_112926765.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17566.31 Da        Isoelectric Point: 5.0338

>NTDB_id=293485 DCD74_RS07505 WP_112926761.1 1563645..1564133(-) (ssb) [Solilutibacter oculi strain 83-4]
MARGINKVILVGNLGNDPETKYTQGGMAVTKISLATTSVRKDRDGNNQEKTEWHRVTFFGKLGEIAGEYLRKGSQCYIEG
RISYSETTGDDGQKRYFTDIIADEMQMLGGRGDGGGGGGGFGGGQERAPRAQPAQRREPQRQAPPAQDFANDGGFDDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=293485 DCD74_RS07505 WP_112926761.1 1563645..1564133(-) (ssb) [Solilutibacter oculi strain 83-4]
ATGGCACGCGGCATCAACAAGGTGATTCTGGTCGGCAACCTCGGCAACGACCCGGAAACCAAATACACCCAGGGCGGCAT
GGCGGTCACCAAGATCAGCCTCGCCACCACCTCGGTCCGCAAGGACCGCGACGGCAACAACCAGGAAAAGACCGAGTGGC
ACCGGGTCACCTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAAGGC
CGCATCAGCTACAGCGAAACCACCGGTGACGACGGCCAGAAGCGCTACTTCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGCCGTGGCGACGGCGGTGGTGGGGGAGGCGGCTTCGGTGGCGGCCAGGAGCGTGCACCGCGCGCGCAGCCGG
CCCAGCGTCGCGAGCCGCAGCGCCAGGCGCCGCCGGCGCAGGATTTCGCCAACGATGGCGGCTTCGACGACGACGACATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.191

100

0.519
  ssb Neisseria meningitidis MC58

43.333

100

0.481
  ssb Neisseria gonorrhoeae MS11

43.333

100

0.481
  ssb Glaesserella parasuis strain SC1401

41.176

100

0.475

Multiple sequence alignment