Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPEA_RS01785 Genome accession   NC_009901
Coordinates   372147..373667 (-) Length   506 a.a.
NCBI ID   WP_012153601.1    Uniprot ID   A8GZC3
Organism   Shewanella pealeana ATCC 700345     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 367147..378667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPEA_RS01765 (Spea_0328) - 367542..367940 (-) 399 WP_012153597.1 hypothetical protein -
  SPEA_RS01770 (Spea_0329) - 368228..369178 (-) 951 WP_012153598.1 acyltransferase -
  SPEA_RS01775 (Spea_0330) - 369186..370091 (-) 906 WP_012153599.1 acyltransferase -
  SPEA_RS01780 (Spea_0331) - 370305..371753 (-) 1449 WP_223296552.1 EAL domain-containing protein -
  SPEA_RS01785 (Spea_0332) comM 372147..373667 (-) 1521 WP_012153601.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPEA_RS01790 - 374044..374241 (-) 198 WP_150102195.1 hypothetical protein -
  SPEA_RS01795 (Spea_0333) - 374320..376035 (+) 1716 WP_012153602.1 P-loop NTPase fold protein -
  SPEA_RS01800 (Spea_0334) - 376866..378122 (-) 1257 WP_012153603.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55194.15 Da        Isoelectric Point: 8.2579

>NTDB_id=29347 SPEA_RS01785 WP_012153601.1 372147..373667(-) (comM) [Shewanella pealeana ATCC 700345]
MPIASIATRASFGVQAPPVTVEVHLSNGLPAFNLVGLPEASVKEAKERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPAKSVEQHEFVGELALTGHIRYCQGLLPVIVEASKQNSTLVLPIDNREDAELVGFEKVCFATHL
QSLAAYLHGQSQLPSIDLNLEWLTQSSEPKTSCLSEVIGQYQAKQALEIAAAGNHNLLLLGPPGTGKTMLASRMMQLLPK
LNYDEALEVAAIHSVAGNNIKPDSFYRRPFRSPHHTCSAVSLVGGGAQPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVSISRAAAKLTFASRFQLIAAMNPSPCGDTDNARASNEQIQRYLSKLSGPFLDRFDLTIDVPKLPLGSLNSQNT
QAETSETIAKRVQQARKTQLARSGVLNSELTGKQLKQDARFRDDDLVFLEQSVHRLGLSVRSYHRLQRVARTIADLQQED
NVSRAHIAQALGYRAMDRLLASLSSQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=29347 SPEA_RS01785 WP_012153601.1 372147..373667(-) (comM) [Shewanella pealeana ATCC 700345]
ATGCCCATAGCCAGTATTGCCACCCGTGCCAGCTTTGGCGTCCAAGCCCCACCTGTCACCGTCGAAGTCCACCTCAGCAA
CGGACTGCCCGCATTCAACCTAGTAGGACTGCCCGAAGCCTCAGTCAAAGAGGCCAAAGAACGTGTGAGAAGCGCACTCA
TCAACGCCGGATTTGAATTCCCCATGCGCCGCATCACAGTTAACCTAGCGCCAGCGGATCTCCCCAAACAAGGTGGCCGC
TATGATCTACCTATCGCCATCGGTATCCTCGCCGCCTCGAAACAGATCCCTGCAAAATCTGTCGAGCAACATGAATTCGT
CGGCGAACTAGCGCTAACCGGCCATATCCGTTACTGCCAAGGCCTACTGCCTGTGATAGTCGAAGCCAGCAAGCAAAATA
GCACCTTAGTCTTGCCGATTGATAATCGTGAAGATGCCGAGCTGGTCGGTTTCGAGAAAGTCTGCTTCGCTACCCATCTG
CAATCACTGGCTGCGTATCTGCACGGCCAATCGCAACTGCCGAGTATCGATCTTAACCTCGAATGGCTAACACAGAGTTC
AGAGCCTAAAACCTCCTGTTTAAGTGAGGTTATAGGCCAATATCAGGCTAAACAAGCGTTAGAGATTGCCGCTGCGGGTA
ACCATAATTTGTTGTTACTAGGGCCTCCCGGCACAGGCAAGACCATGCTCGCCAGCCGCATGATGCAGCTATTACCTAAA
TTGAACTACGACGAAGCACTGGAAGTTGCCGCCATTCACTCCGTCGCGGGTAACAACATCAAACCCGATAGCTTCTATCG
CCGCCCCTTTAGAAGCCCTCACCATACCTGTTCGGCGGTGTCTCTGGTGGGTGGCGGTGCCCAGCCTAAACCCGGTGAAA
TATCATTAGCCCATAGAGGCGTTCTGTTTTTAGATGAGGTAGCTGAGTTTCCTAGAAAAGTACTCGATTGCCTACGTGAG
CCAATGGAAACAGGTGAAGTGAGTATCTCGCGCGCGGCTGCAAAGCTGACCTTTGCCAGTCGATTTCAGTTAATCGCTGC
CATGAATCCTAGCCCCTGTGGTGATACCGATAATGCTAGGGCTAGTAATGAGCAGATCCAACGCTATCTTTCAAAGTTGT
CTGGGCCGTTTCTCGACCGCTTCGACCTCACCATAGATGTGCCTAAACTGCCTTTAGGCTCTCTTAACAGTCAAAACACT
CAAGCCGAAACCAGTGAAACAATAGCCAAACGGGTACAACAAGCACGAAAAACGCAACTCGCTCGCTCTGGTGTGCTCAA
CAGTGAACTCACGGGCAAGCAACTCAAACAAGATGCTAGGTTTCGCGATGATGACTTAGTCTTTTTAGAGCAAAGCGTAC
ATAGGCTCGGCTTATCGGTGCGTAGTTATCACCGCCTACAGCGGGTGGCCCGCACCATTGCCGACCTTCAACAGGAAGAT
AACGTCAGCCGCGCCCATATCGCCCAGGCGTTAGGGTACCGCGCCATGGATAGATTACTTGCCTCACTGTCTAGCCAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8GZC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.102

100

0.563
  comM Glaesserella parasuis strain SC1401

54.706

100

0.551
  comM Haemophilus influenzae Rd KW20

54.921

100

0.551
  comM Vibrio campbellii strain DS40M4

53.922

100

0.543
  comM Legionella pneumophila str. Paris

48.303

99.012

0.478
  comM Legionella pneumophila strain ERS1305867

48.303

99.012

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.687

98.617

0.431

Multiple sequence alignment