Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DKK66_RS04445 Genome accession   NZ_CP029539
Coordinates   945681..947180 (-) Length   499 a.a.
NCBI ID   WP_131355844.1    Uniprot ID   -
Organism   Aquitalea sp. USM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 940681..952180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS04420 (DKK66_04410) - 941550..942356 (+) 807 WP_242673568.1 RimK family alpha-L-glutamate ligase -
  DKK66_RS04425 (DKK66_04415) purB 942424..943794 (+) 1371 WP_062786374.1 adenylosuccinate lyase -
  DKK66_RS04435 (DKK66_04425) - 944193..944810 (-) 618 WP_131355838.1 thiol:disulfide interchange protein DsbA/DsbL -
  DKK66_RS04440 (DKK66_04430) - 944838..945608 (-) 771 WP_131355841.1 SPOR domain-containing protein -
  DKK66_RS04445 (DKK66_04435) comM 945681..947180 (-) 1500 WP_131355844.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DKK66_RS04450 (DKK66_04440) - 947186..947473 (-) 288 WP_062786388.1 accessory factor UbiK family protein -
  DKK66_RS04455 (DKK66_04445) glnK 947745..948083 (+) 339 WP_045845429.1 P-II family nitrogen regulator -
  DKK66_RS04460 (DKK66_04450) - 948114..949424 (+) 1311 WP_131355847.1 ammonium transporter -
  DKK66_RS04465 (DKK66_04455) metK 949565..950734 (-) 1170 WP_062786391.1 methionine adenosyltransferase -
  DKK66_RS04470 (DKK66_04460) - 950812..951705 (+) 894 WP_131355850.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53218.24 Da        Isoelectric Point: 7.4724

>NTDB_id=293350 DKK66_RS04445 WP_131355844.1 945681..947180(-) (comM) [Aquitalea sp. USM4]
MALAVVASRALAGLHAPEVAVEVHLANGLPQFTIVGLPDTEVKESRDRVRAAILNSGFEFPARRITVNLAPADLPKDSGR
FDLPIAIGILVAAGQIQCPHLADYEFAGELALSGQLRAVRGALAMACQTRRAGRAFMLPRDCAQEAALVLADQVYAVDSL
LQVCAHLNGTQPCSPIVVNQNDTRPVYPDLADVKGQAAARYALEIAAAGGHSLLLVGPPGTGKSMLASRLPGILPTMNEE
EALEAASVQSLGTRGFLLEQWRQRPFRAPHHTASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
KVIHISRASRQAIFPADFQLVAAMNPCPCGYQGQPSGRCQCTPEQIARYVGKLSGPLLDRIDMHVPVPALGADELTSAVA
GEGSELVRLRVQQARDVQLQRQGCSNARLSGLALEQYGAADPAALALLAGALEKLGLSARSYHRILRIGRTVADLQGSVK
LERHHMLQAIQLRRSGFGV

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=293350 DKK66_RS04445 WP_131355844.1 945681..947180(-) (comM) [Aquitalea sp. USM4]
ATGGCTCTGGCCGTAGTAGCGAGCCGTGCCCTGGCCGGGCTGCATGCCCCGGAAGTTGCCGTTGAAGTCCATCTGGCCAA
TGGACTTCCGCAGTTCACCATCGTCGGCTTGCCCGACACCGAAGTGAAGGAAAGCCGGGACCGTGTCCGGGCCGCCATTC
TCAATTCTGGTTTTGAATTCCCCGCGCGTCGCATTACGGTCAATCTGGCACCAGCTGATCTGCCCAAGGACTCTGGCCGT
TTCGACCTTCCCATTGCCATTGGCATTCTGGTTGCCGCCGGCCAGATACAATGCCCACATCTTGCAGACTATGAATTTGC
CGGCGAACTGGCACTGAGTGGCCAGCTGCGTGCAGTGCGCGGTGCCCTGGCCATGGCATGCCAAACCCGTCGTGCAGGCC
GTGCCTTCATGTTGCCGCGAGACTGTGCTCAGGAAGCTGCGTTGGTGCTGGCAGATCAGGTTTATGCCGTGGATAGCTTG
CTGCAAGTTTGTGCACACCTGAATGGCACCCAGCCCTGTTCACCCATCGTCGTCAACCAGAATGACACACGGCCCGTTTA
TCCGGACTTGGCCGATGTCAAAGGCCAGGCCGCAGCACGTTATGCCCTGGAGATTGCCGCTGCAGGTGGACACAGCCTGT
TGCTGGTAGGGCCGCCGGGTACGGGGAAGTCCATGCTGGCATCGCGTTTGCCGGGCATTCTGCCAACGATGAATGAGGAA
GAAGCGCTGGAGGCCGCCTCGGTTCAGTCACTTGGCACGCGAGGCTTTTTACTGGAACAATGGCGCCAAAGACCATTCAG
GGCTCCGCACCACACCGCATCAGCCGTTGCCCTGGTTGGCGGCGGTTCAGATCCGCGGCCGGGTGAAATCAGTCTGGCAC
ATCATGGCGTGTTGTTTCTGGATGAGTTGCCAGAATTCGATCGCAAGGTATTGGAAGTATTGCGTGAACCTTTGGAGTCC
AAAGTAATCCATATTTCGCGCGCCAGCCGGCAAGCCATTTTTCCCGCCGACTTTCAACTGGTTGCTGCCATGAATCCCTG
TCCTTGCGGGTATCAGGGGCAGCCTTCCGGGCGCTGTCAATGTACACCGGAACAAATTGCCCGCTATGTTGGCAAATTAT
CGGGCCCATTGTTGGACCGGATCGACATGCATGTACCGGTTCCGGCACTGGGTGCGGATGAACTCACCAGTGCGGTGGCC
GGCGAGGGAAGCGAGCTGGTGCGTCTTCGGGTTCAGCAGGCGCGTGATGTGCAGTTGCAGCGTCAGGGATGCAGTAATGC
CCGTCTTTCCGGATTGGCGCTGGAGCAATATGGCGCGGCAGACCCGGCAGCACTTGCCTTGCTGGCAGGTGCTCTGGAAA
AGTTGGGACTGTCGGCCAGAAGTTATCACCGGATATTACGCATCGGGCGTACGGTGGCGGATCTGCAAGGAAGCGTGAAA
CTGGAACGACATCATATGCTGCAAGCCATTCAATTAAGAAGGAGTGGTTTTGGTGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

100

0.537
  comM Vibrio campbellii strain DS40M4

53.333

99.198

0.529
  comM Glaesserella parasuis strain SC1401

51.697

100

0.519
  comM Haemophilus influenzae Rd KW20

51.303

100

0.513
  comM Legionella pneumophila str. Paris

49.307

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.307

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.821

100

0.451

Multiple sequence alignment