Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DKK66_RS04405 Genome accession   NZ_CP029539
Coordinates   938748..939083 (-) Length   111 a.a.
NCBI ID   WP_045845420.1    Uniprot ID   A0A4P6THP8
Organism   Aquitalea sp. USM4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 933748..944083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS04390 (DKK66_04380) pilF 933985..935697 (-) 1713 WP_131355826.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DKK66_RS04395 (DKK66_04385) - 935882..936952 (-) 1071 WP_131355829.1 porin -
  DKK66_RS04400 (DKK66_04390) - 937294..938691 (+) 1398 WP_131355832.1 deoxyribodipyrimidine photo-lyase -
  DKK66_RS04405 (DKK66_04395) comE 938748..939083 (-) 336 WP_045845420.1 ComEA family DNA-binding protein Machinery gene
  DKK66_RS04410 (DKK66_04400) - 939121..939942 (-) 822 WP_062786365.1 inner membrane protein YpjD -
  DKK66_RS04415 (DKK66_04405) ffh 940051..941406 (+) 1356 WP_045845422.1 signal recognition particle protein -
  DKK66_RS04420 (DKK66_04410) - 941550..942356 (+) 807 WP_242673568.1 RimK family alpha-L-glutamate ligase -
  DKK66_RS04425 (DKK66_04415) purB 942424..943794 (+) 1371 WP_062786374.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11439.51 Da        Isoelectric Point: 10.7114

>NTDB_id=293349 DKK66_RS04405 WP_045845420.1 938748..939083(-) (comE) [Aquitalea sp. USM4]
MKKLFALIVGMFFICASALAAININTANQQQLESLNGIGPVKAKAIIDYRTKNGAFKTVDDLKKVSGIGDKTLEKLKKDI
SVTGTSTVPAPAAATPAKAAAPAAKAAPAKK

Nucleotide


Download         Length: 336 bp        

>NTDB_id=293349 DKK66_RS04405 WP_045845420.1 938748..939083(-) (comE) [Aquitalea sp. USM4]
ATGAAAAAACTGTTTGCGCTGATTGTTGGTATGTTTTTTATCTGCGCCTCCGCACTGGCCGCCATCAACATTAATACGGC
TAACCAGCAGCAGCTTGAGTCTCTCAATGGCATCGGCCCGGTCAAGGCCAAAGCCATTATCGATTACCGCACCAAGAATG
GTGCATTCAAGACGGTAGATGATCTGAAGAAGGTAAGCGGTATCGGCGACAAGACACTGGAAAAGTTGAAGAAGGACATC
AGTGTCACCGGGACTAGTACCGTTCCCGCTCCTGCGGCCGCAACCCCTGCCAAGGCGGCTGCACCAGCAGCCAAGGCCGC
GCCGGCGAAAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6THP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.095

94.595

0.55
  comE Neisseria gonorrhoeae MS11

58.095

94.595

0.55
  comE Neisseria gonorrhoeae MS11

58.095

94.595

0.55
  comE Neisseria gonorrhoeae MS11

58.095

94.595

0.55
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

73.874

0.405

Multiple sequence alignment